Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h12
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)            28   8.3  

>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 58  QQNDLNTITEEYKTHITQWGRKKEEYFRRRRSRCSEDPVQ 177
           +QNDLN + E YK   T++ R+   Y R R S      VQ
Sbjct: 575 RQNDLNILYETYKMKFTEFERRYPYYSRFRFSANKHGDVQ 614


>SB_24266| Best HMM Match : Transposase_35 (HMM E-Value=1.2)
          Length = 151

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 183 RKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVRD-KIAESTMALDNPFSIR 359
           RK+  K R ++ F  +HN  DY+T  V+ +  RI     R+ + K+A  T   + P+  +
Sbjct: 2   RKIAYKLRTLRKFKLSHNLEDYLT-DVKNIDHRIALTKFRLSNHKLAIETGRYEKPYK-K 59

Query: 360 FYEDRCTV 383
             E +C V
Sbjct: 60  PNERKCLV 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,430
Number of Sequences: 59808
Number of extensions: 356909
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)