Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h12
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29020.1 68416.m03626 myb family transcription factor (MYB110...    27   8.9  
At1g67150.1 68414.m07639 hypothetical protein contains Pfam prof...    27   8.9  

>At3g29020.1 68416.m03626 myb family transcription factor (MYB110)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 233

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = -2

Query: 350 KRIIQSHSAFGD-FISDSV*YTVNSSYHFSNTLRYVIGRIMIVEKCFHPSVFQDHLSSHW 174
           +R++ +H AFG+ +   +  +   +     N    ++ R M  +   +   F    S+H 
Sbjct: 126 ERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLMARKMRQQSSSYVQRFNG--SAH- 182

Query: 173 TGSSEHRLLLLRKYSSFFLPHCVMCVLYSSVIVFRSFCCLNLR 45
             +++H++  L    S    H  +C+ ++SVIV R F  L+LR
Sbjct: 183 ESNTDHKIFNLSPGLSLLTLH--ICIEFNSVIVMRYFRYLSLR 223


>At1g67150.1 68414.m07639 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 408

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 374 SVFIKAYTKRIIQSHSAFGDFISDSV*YT 288
           S+FI  +  R+ +SH   GD I D   YT
Sbjct: 113 SIFIVEFILRMYESHEKIGDMIVDKPFYT 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,484
Number of Sequences: 28952
Number of extensions: 262271
Number of successful extensions: 623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)