Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h10
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.32 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.8  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    25   9.0  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 238  NYIIQEPVVTPVYSVIIVLSYPVFALVINLYLTFIPCTASESLFRIINE 92
            N II EP++  +  ++++       LV+N +L   P   SE    ++ E
Sbjct: 1043 NAIICEPLLCTLCHLLVIHDSRTVGLVVNAFLAITPLLVSEQAHSLVRE 1091


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 298 IARASRRKLRAEWH*TQREHNYIIQEPVVTPVYSVIIVLSY 176
           + R +R  L+AE    +R+HNY+   P VT   +V I  ++
Sbjct: 799 LGRLTRLWLKAE---QERQHNYLKDGPYVTADEAVAIYTTF 836


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 185 FIIPGFCARHKFVFNFY 135
           FI PGFC  + F+F+ +
Sbjct: 559 FITPGFCGIYVFIFSVF 575


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 54  SIKCLKEKYSRAISFIILNKDSE 122
           SIK LK+ Y +A S  I +KDSE
Sbjct: 301 SIKDLKDLYEKANSKDIYDKDSE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,665
Number of Sequences: 5004
Number of extensions: 42407
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)