Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h10
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   5.2  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   5.2  
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441...    28   5.2  
03_05_0324 - 23121401-23121465,23121507-23122059                       27   9.1  

>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 298 IARASRRKLRAEWH*TQREHNYIIQEPVVTPVYSVII 188
           + R +R  L+AE    +R+HNY+   P VTP  +V I
Sbjct: 790 LGRLTRLWLKAE---QERQHNYLKDGPYVTPEEAVAI 823


>05_01_0460 -
           3644229-3644420,3644623-3644865,3644959-3645237,
           3645328-3645525,3645614-3646249,3646352-3646606,
           3646718-3646824,3646909-3650705,3650816-3651305,
           3652043-3652433,3652621-3652713,3652818-3652941,
           3653871-3654118
          Length = 2350

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 298 IARASRRKLRAEWH*TQREHNYIIQEPVVTPVYSVII 188
           + R +R  L+AE    +R+HNY+   P VTP  +V I
Sbjct: 790 LGRLTRLWLKAE---QERQHNYLKDGPYVTPEEAVAI 823


>03_01_0599 +
           4416441-4416549,4416854-4417394,4417476-4417939,
           4418361-4418496,4418616-4418687,4418777-4418845,
           4418940-4419011,4419101-4419172,4419359-4419416
          Length = 530

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 346 SKKNLPPDWKHDP-LRRPGEKLSGLCLSGEAMRPI 447
           S KN PPDW  DP L R       +C  G  +R +
Sbjct: 381 SIKNPPPDWAGDPCLPRQNSWTGVICSEGSPVRVV 415


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 343 NSKKNLPPDWKHDPLRRPGEKLSGLC 420
           N+ K+ PPD KH+P R   E     C
Sbjct: 127 NAAKSCPPDKKHEPTRITSEATRTWC 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742,216
Number of Sequences: 37544
Number of extensions: 254774
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)