Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h10
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    27   7.1  
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   27   7.1  
SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 27   9.4  
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)                  27   9.4  

>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 208 PVYSVIIVLS---YPVFALVINLYLTFIPCTASESLF-RIINEIARLYFSLRHL 59
           PVY V   LS   YPV+ +  +L ++FIP T S  ++ R ++ I  L  S R L
Sbjct: 98  PVYRVHYPLSRVLYPVYRVFYHLPVSFIPYTVSFIIYPRPLSRIPCLLSSTRVL 151


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 251 TARAQLYNTRTGCHARLFGHNCFIIPG 171
           T  ++LYNTR  C +R++  +  ++PG
Sbjct: 81  TCGSRLYNTRVTCDSRMYLVSLTVLPG 107


>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 217  VVTPVYSVIIVLSYPVFALV--INLYLTFIPCTASESLFRIINEIARLYFSLRHL 59
            VVTP    I +L   V A+    N  +    C AS+ + R ++++  L FS RH+
Sbjct: 919  VVTPEAGQIDILLRLVSAVFKGTNTVIILDDCAASKDVKRRLDQLVNLAFSARHV 973


>SB_57599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 287 EPPQITC*VALNTARAQLYNTRTGCHARLFGHNCFIIPGFCARH 156
           +PP+IT  +    A   +  ++ GC AR+   N   +   CA H
Sbjct: 276 DPPKITAFLHRRAATGYMSGSQRGCAARILEKNPKAVYIHCASH 319


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 217  VVTPVYSVIIVLSYPVFALV--INLYLTFIPCTASESLFRIINEIARLYFSLRHLIES 50
            VVTP    I +L   V A+    N  +    C AS+ + R  +++  L FS+RH + S
Sbjct: 956  VVTPEAGQIDILLRFVSAVFEGTNTLIILDDCAASKDVKRRSDQLVNLAFSVRHQLTS 1013


>SB_16283| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 410

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 217 VVTPVYSVIIVLSYPVFALV--INLYLTFIPCTASESLFRIINEIARLYFSLRHL 59
           V+ P    I +L   V AL   IN  +    C AS+ + R  +++  L FS RH+
Sbjct: 64  VIAPEAGQIDILQRFVSALFEGINTLIILDDCAASKDVKRRSDQLVNLAFSARHV 118


>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
          Length = 1062

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 217 VVTPVYSVIIVLSYPVFALV--INLYLTFIPCTASESLFRIINEIARLYFSLRHL 59
           V+ P    I +L   V AL   IN  +    C AS+ + R  +++  L FS RH+
Sbjct: 437 VIAPEAGQIDILQRFVSALFEGINTLIILDDCAASKDVKRRSDQLVNLAFSARHV 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,835
Number of Sequences: 59808
Number of extensions: 315287
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)