Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h10
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   7.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   7.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   7.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   7.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 100 INEIARLYFSLRHLIESDMYWFGY 29
           I+  +R+ F L  L  +  YWF Y
Sbjct: 423 IDRASRIVFPLFFLAINVFYWFAY 446


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 227 TRTGCHARLFGHNCFIIPGFCARHK 153
           TRT      F H   I    C RH+
Sbjct: 31  TRTKLQPTYFHHTYIIYESLCGRHE 55


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 227 TRTGCHARLFGHNCFIIPGFCARHK 153
           TRT      F H   I    C RH+
Sbjct: 31  TRTKLQPTYFHHTYIIYESLCGRHE 55


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q PV  PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q PV  PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q PV  PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q PV  PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q PV  PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 113 NYIEQIPIPVPVY 125


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 113 NYIEQIPIPVPVY 125


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 113 NYIEQIPIPVPVY 125


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 113 NYIEQIPIPVPVY 125


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 112 NYIEQIPIPVPVY 124


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 117 NYIEQIPIPVPVY 129


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 117 NYIEQIPIPVPVY 129


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 117 NYIEQIPIPVPVY 129


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 114 NYIEQIPIPVPVY 126


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 347 NYIEQIPIPVPVY 359


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 238 NYIIQEPVVTPVY 200
           NYI Q P+  PVY
Sbjct: 347 NYIEQIPIPVPVY 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,920
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 32
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)