Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h10
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39580.1 68417.m05596 kelch repeat-containing F-box family pr...    30   0.82 
At3g05990.1 68416.m00684 leucine-rich repeat family protein cont...    28   3.3  
At3g47080.1 68416.m05112 expressed protein                             27   5.8  
At1g63010.2 68414.m07116 SPX (SYG1/Pho81/XPR1) domain-containing...    27   5.8  
At1g63010.1 68414.m07115 SPX (SYG1/Pho81/XPR1) domain-containing...    27   5.8  

>At4g39580.1 68417.m05596 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 375

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -2

Query: 238 NYIIQEPVVTPVYSVIIVLSYPVFALVINLYLTFIPCTASESLFRIINEIAR----LYFS 71
           N  + + ++    S I  L YP F+LV   + + I   AS  L++  + + R    LY S
Sbjct: 23  NLFLPDDILLSSLSRISRLYYPTFSLVSKSFRSLI---ASPELYQTRSILGRTESCLYVS 79

Query: 70  LRHLIESDMYWF 35
           LR L +S++ W+
Sbjct: 80  LRLLNDSNLRWY 91


>At3g05990.1 68416.m00684 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leaf
           senescence-associated receptor-like protein kinase
           [Phaseolus vulgaris] gi|9837280|gb|AAG00510
          Length = 517

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 343 NSKKNLPPDWKHDPLRRPGEKLSGL-CLSGEAMRPI 447
           NS KN P DW  DP        SG+ C  G  +R +
Sbjct: 373 NSFKNAPADWSGDPCLPKNYSWSGISCSEGPRIRVV 408


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 316 KSCQFKYFCNSK-KNLPPDWK--HDPLRRPGEKLSGLCLSGEA 435
           KSC+   F NS  K +  D K  H+PLRR     SG   S EA
Sbjct: 71  KSCELWQFSNSTTKKIRTDVKKKHNPLRRVCSASSGFFSSDEA 113


>At1g63010.2 68414.m07116 SPX (SYG1/Pho81/XPR1) domain-containing
           protein contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 244 EHNYIIQEPVVTPVYSVIIVLSYPVFALVINLYLTFI 134
           +H  I+Q+ +VTP    I   SY   +L++NL  TF+
Sbjct: 223 QHALIMQDDLVTPSEDTIDERSYHFNSLLLNLGNTFL 259


>At1g63010.1 68414.m07115 SPX (SYG1/Pho81/XPR1) domain-containing
           protein contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 244 EHNYIIQEPVVTPVYSVIIVLSYPVFALVINLYLTFI 134
           +H  I+Q+ +VTP    I   SY   +L++NL  TF+
Sbjct: 223 QHALIMQDDLVTPSEDTIDERSYHFNSLLLNLGNTFL 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,544
Number of Sequences: 28952
Number of extensions: 211851
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)