Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h09
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q11WT3 Cluster: DTDP-glucose 4,6 dehydratase; n=1; Cyto...    33   8.6  
UniRef50_Q37382 Cluster: NADH-ubiquinone oxidoreductase chain 3;...    33   8.6  

>UniRef50_Q11WT3 Cluster: DTDP-glucose 4,6 dehydratase; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: DTDP-glucose 4,6
           dehydratase - Cytophaga hutchinsonii (strain ATCC 33406
           / NCIMB 9469)
          Length = 301

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 187 RDFLLNYFVVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFSMQPMKPGYPW 14
           RDF LN   VF  ++S ++++ SC F   ++ +   NP  L +     + P+ P Y W
Sbjct: 83  RDFHLNVLNVFNMLDSIRKNIPSCKFVNLSSAAVYGNPESLPIKEDTPINPLSP-YGW 139


>UniRef50_Q37382 Cluster: NADH-ubiquinone oxidoreductase chain 3;
           n=4; Eukaryota|Rep: NADH-ubiquinone oxidoreductase chain
           3 - Acanthamoeba castellanii (Amoeba)
          Length = 118

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 175 LNYFVVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFSMQPMKPGY--PW 14
           L+YF+V+   +  + S + C F+P      KFN R+  +   F +  ++  Y  PW
Sbjct: 25  LSYFLVYQESDIEKNSAYECGFQPFEDTRSKFNVRYYLIAILFMIFDLEIMYLFPW 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,784,885
Number of Sequences: 1657284
Number of extensions: 10040545
Number of successful extensions: 18685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18683
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)