Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h09
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   2.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   5.8  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 225 FKIYDAFQFYESVEIFYLIIS*FSFR 148
           F+I+D   F+  + ++YL++S F FR
Sbjct: 135 FRIFDVPVFWPILVVYYLVLSFFCFR 160


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 163 VVFVSMNSNQESLHSCVFRPATAVSRKFNPRWLSVVSTFS 44
           V+F ++NS  ES    VFR  T++ R  + +  +V   F+
Sbjct: 143 VIFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFT 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,050
Number of Sequences: 5004
Number of extensions: 44472
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)