Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h09
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52950.1 68418.m06570 expressed protein ; expression supporte...    28   5.0  
At5g66380.1 68418.m08370 mitochondrial substrate carrier family ...    28   6.6  

>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  QASSVALRMLRQRTATED*ICETPLWLVETR 117
           Q    A R   QR+   D +CETP+  +ET+
Sbjct: 885 QQQRTAKRKKEQRSVEYDRVCETPMTTIETK 915


>At5g66380.1 68418.m08370 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 308

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 82  ICETPLWLVETRSYAETP 135
           +C  P+WLV+TR   +TP
Sbjct: 122 LCTNPIWLVKTRLQLQTP 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,241
Number of Sequences: 28952
Number of extensions: 214471
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)