Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h08
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 29 0.37
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 29 0.49
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 27 2.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 27 2.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 3.4
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 7.9
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 7.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.9
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 29.5 bits (63), Expect = 0.37
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 124 IRKFSDSCQEASGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLN- 300
+++ + S ++ S E N+KL SS+ + ++++L+P QE D+K + QH+
Sbjct: 73 LQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQE-DKKDLHIVTQHITP 131
Query: 301 ELSERMKLGQA 333
+L++ K G +
Sbjct: 132 QLTKESKKGSS 142
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.49
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 163 EINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLNELSERMKLGQAFVL 342
E N + SK +++G K L P E + K LQH ++S + L A +
Sbjct: 367 EQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATLQ 426
Query: 343 TDVVPEY 363
+ +P+Y
Sbjct: 427 QNCIPQY 433
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 334 FVLTDVVPEYSAVALASLGPKDPGYNQLEALDETRENLRWAV 459
F +T+++ E S V LGPKDP + A ++ W +
Sbjct: 182 FKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEI 223
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 346 RSVQTPGLASFALTIHSNVEVSFPQISDQAPDRLESTL 233
RSV P L++ A NV + PQ +++ ++L L
Sbjct: 127 RSVSAPSLSALATQAQRNVSKTLPQSTNETIEKLRQFL 164
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 406 SQGPLALTKRALQQSTPGPRRSVQTPGLASFALTIH 299
SQ P L + + PG R+ V +A +LT+H
Sbjct: 740 SQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVH 775
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 340 LTDVVPEYSAVALAS-LGPKDPGYNQLEALDETREN 444
++D+V + V L+ +G KDP + LDET N
Sbjct: 319 ISDLVTPFIQVFLSEYIGDKDPMTYDIALLDETNRN 354
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 7.9
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = -3
Query: 349 RRSVQTPGLASFALTIHSNVEVSFPQISDQAPDRLESTLVSCRIDKHQEXXXXXXXXXXX 170
RRS F I+S + + +D PD LES+ + + QE
Sbjct: 89 RRSSHKTRPKQFDECIYSPYSYNNEETTDLLPDTLESSRGTLNRESSQE-------SLQS 141
Query: 169 LFHHLLLDMNQKIFLSI*CLIY 104
+F LD NQ +F + C Y
Sbjct: 142 IFEESGLDRNQPLFREVFCFTY 163
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 256 ELDQKSGGKILQHLNELSERMKLGQAFVLTDVV 354
+L S GK+++ L E E +K G+A+ +V+
Sbjct: 712 QLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVM 744
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 485 IEGVEISPCRLTRNTTLQPRLPN*PPGDL 571
++ +E +P LTR P L N P DL
Sbjct: 384 LQNLEEAPMNLTRPINANPHLTNHSPNDL 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,155
Number of Sequences: 5004
Number of extensions: 37311
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -