Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h08
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0138 + 23067885-23068245,23068393-23068634                       33   0.16 
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     30   1.1  
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           29   2.7  
06_03_1330 - 29375494-29376912                                         28   4.6  
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511...    28   6.1  
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493...    27   8.1  
02_02_0030 - 6207784-6208154,6208286-6211310                           27   8.1  
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    27   8.1  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 27   8.1  

>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 454 PNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSVQTPGLAS 317
           P    P S P   A  +  P+ +T+   QQ TP P+ S QTP  +S
Sbjct: 131 PPVSVPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSS 176


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   NLYNIFFYFTTECF*IIYNGFFKSIF 83
           N  N+  YF T+ F   + G+FKSIF
Sbjct: 91  NQANVIRYFPTQAFNFAFKGYFKSIF 116


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 451 WAVGAGVRVLQNRGCG 498
           W +G  +RVLQN GCG
Sbjct: 533 WDIGCPIRVLQNDGCG 548


>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 PGVCTDRRGPGVLCCSARFVRAKGPWL 407
           PGVCT  +       +ARF  A+ PWL
Sbjct: 40  PGVCTAWQSADAASATARFRAAQPPWL 66


>12_01_0620 +
           5109756-5109758,5110016-5110255,5110264-5110653,
           5110723-5110995
          Length = 301

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 262 DQKSGGKILQHLNELSERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYN 411
           D     +I +H  E+  +MK  +A+ L DVV E     LA  G   P  N
Sbjct: 11  DDAEAREIERHYKEVKRKMKTRKAYNLNDVVFEGYRSLLAMHGRAKPDEN 60


>07_03_1589 +
           27948546-27948548,27948890-27948958,27949235-27949335,
           27949460-27950173,27951172-27951333,27951669-27952458
          Length = 612

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 310 ERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYNQLEALDETRENLRWAVGAGVRV 477
           E +K G   ++ DV  E    A A LGP D  Y   +  DE +  +  AV   VR+
Sbjct: 372 EFIKNGAKVIIADVQDELGHSAAAKLGP-DASYTHCDVTDEAQ--VEAAVDLAVRL 424


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 340 LTDVVPEYSAVALASLGPKDPGYNQLEALD 429
           LT +VP + +  L +L   D GYNQLEA D
Sbjct: 427 LTGIVPSFGS--LPNLQDLDLGYNQLEAGD 454


>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 460 QQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSV 338
           ++PN     +HP  R D S+ P  L K  +  STPGPR S+
Sbjct: 825 RRPNVPRMPAHP--RHDGSRRPSILKKPQVTGSTPGPRPSL 863


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 340 LTDVVPEYSAVALASLGPKDPGYNQLEALD 429
           LT +VP + +  L +L   D GYNQLEA D
Sbjct: 478 LTGIVPSFGS--LPNLHDLDLGYNQLEAGD 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,748
Number of Sequences: 37544
Number of extensions: 240808
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)