Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h08
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family...    30   0.96 
At5g56075.1 68418.m06996 hypothetical protein                          29   2.9  
At3g06200.1 68416.m00713 guanylate kinase, putative similar to g...    28   3.9  
At1g53080.1 68414.m06010 legume lectin family protein                  27   6.8  
At1g10350.1 68414.m01166 DNAJ heat shock protein, putative simil...    27   6.8  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    27   9.0  

>At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 391

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 460 QQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSV---QTPGLASFALTIHSNV 290
           + P EG P S P++RADC +G +     AL+   P  +R +   QT  +   ++ +H  +
Sbjct: 177 KDPYEGIPMSFPRMRADCFEG-IRARIAALRPDGPIAKRFLTKNQTVAVVGDSVFVHGGL 235


>At5g56075.1 68418.m06996 hypothetical protein 
          Length = 256

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 543 LGCSVVFRVSLHGDISTPSI 484
           LGCSVV+ V++H  I+ PS+
Sbjct: 128 LGCSVVYGVNVHSMITKPSV 147


>At3g06200.1 68416.m00713 guanylate kinase, putative similar to
           guanylate kinase (GMP kinase) [Bacillus halodurans]
           Swiss-Prot:Q9K9Y2; contains Pfam profile: PF00625
           guanylate kinase
          Length = 282

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 307 SERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYNQ-LEALDETRENLRWAVGAGVRVLQ 483
           S   +LG +F    ++P  + + +   GP   G +  +  L E RE L + V A  R ++
Sbjct: 68  SLEFQLGSSFTADPIIPPPNQIVIVISGPSGVGKDAVINKLREVREGLHFVVTATSRPMR 127


>At1g53080.1 68414.m06010 legume lectin family protein
          Length = 283

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 370 VALASLGPKDPGYNQLEALDETRENLRWAVGAGV 471
           +  A LGP   G ++  AL  TR+N+ ++ G G+
Sbjct: 39  IGYAELGPATDGMSRSGALSMTRDNIPFSHGQGL 72


>At1g10350.1 68414.m01166 DNAJ heat shock protein, putative similar
           to SP|Q9QYJ3 DnaJ homolog subfamily B member 1 (Heat
           shock 40 kDa protein 1) {Mus musculus}; contains Pfam
           profile PF00226: DnaJ domain
          Length = 349

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 490 LDFVGPSHQLQQPNEGFP*SHPKLRAD 410
           LD V P  ++  PNEG P   P  R D
Sbjct: 295 LDIVKPGQEIVIPNEGMPTKDPLKRGD 321


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 79  FSKTRCVMNKLNIKLIRKFSDSCQEASGEINQKLDS 186
           F KTR + N  N  L  K S  CQE    + ++L S
Sbjct: 382 FHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLAS 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,098
Number of Sequences: 28952
Number of extensions: 194200
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)