Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h07
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.30 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.30 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 HRKILQRRFIHHFTDDLGQSQQSVMGHPL 353
           H+++L R ++   ++D+G+     + HP+
Sbjct: 262 HKQVLNRYYLERLSNDMGEVSYVSLDHPI 290


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 HRKILQRRFIHHFTDDLGQSQQSVMGHPL 353
           H+++L R ++   ++D+G+     + HP+
Sbjct: 262 HKQVLNRYYLERLSNDMGEVSYVSLDHPI 290


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 NQYPLLRRT*ENSTKEIHTSFYGRPRTIA 328
           +QYPL+RRT E+   E        P  +A
Sbjct: 556 DQYPLMRRTMESVAAERLNKIGKNPNLVA 584


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 NQYPLLRRT*ENSTKEIHTSFYGRPRTIA 328
           +QYPL+RRT E+   E        P  +A
Sbjct: 524 DQYPLMRRTMESVAAERLNKIGKNPNLVA 552


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 415 LDDKFGGAAVQHRETMGHESALFLSYFQ 498
           +D    GA + +   M   SA+F+S+FQ
Sbjct: 560 VDSSTSGATIVNYSIMIFLSAVFISFFQ 587


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 201 QNSRCANMENTE 236
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,749
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)