Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h06
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   2.5  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   3.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   4.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   7.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   10.0 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   10.0 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   10.0 

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 317 HFGGGTTFVFFCNACIVKAGTILGFLVL 234
           H GGG     F N  IVK  ++ G LVL
Sbjct: 410 HVGGGLKIHVFDNEIIVKVNSVTGRLVL 437


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 249 KNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVQKMLSKRRISRL 392
           K RS     S+ KE+      K+ +      + DD+Q +LSK RISR+
Sbjct: 329 KQRSKDEYASLYKEYTRKEQEKLRK------QNDDLQNLLSKHRISRI 370


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 454 FHHYLPMFFDGLAEGTYPYSFIVERGIHDLVTK 552
           F   L + FD  ++GT+P SF++++    ++T+
Sbjct: 575 FAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTE 607


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +1

Query: 277 ALQKNTKVVPPPKCGVFDPLPPRPTMFRKCYQRGEFPVCIE-FTITGKQLAWKVPIEKLD 453
           +L  + +V+ P  CG F  +        K   R  FP  +  + +T  +L W +  + LD
Sbjct: 240 SLVDDRQVILPDSCGYFCIMGEIAMTLTKL--RELFPSKLTPYVVTFVELVWNIIEKLLD 297

Query: 454 FHHYLPMFFDGLAEGT----YPYSFIVE 525
            +    +F DGL +      YP  ++VE
Sbjct: 298 PYIREVVFSDGLDDSAFGDKYPIRYLVE 325


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 340 PRPTMFRKCYQRGEFPVCIEFTITGKQLA--WKVPIEKLDFHHYLPMF 477
           P P  F  C +  +    I+     KQLA  WK  IE+  FHH   +F
Sbjct: 611 PSPLTFA-CKEIRKLVADIKPVSVEKQLALNWKKDIERPSFHHNQQLF 657


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 286 KNTKVVPPPKCGVFDPLPPRPTMFRKCYQ 372
           K TK+ P P C +   L P  T F K Y+
Sbjct: 104 KPTKIYPLPHCFIVKDLVPDLTYFYKQYK 132


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 504 ISALG*AVKEHRQVVMEVQFLYGNLPSQLFSGNSELDADGKFASLITFSEHRRS 343
           IS++  A++EH +V+ + +F    LPS  F     L A  + +  I F E   S
Sbjct: 493 ISSVALALQEHCKVIFDEEFDLSKLPSSNFLDEIIL-ASNRISVRIKFLERNCS 545


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 5   IGGRPLNKFTFLFYYLC 55
           I G  LN+FT   YYLC
Sbjct: 578 ICGWRLNRFTMFIYYLC 594


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 351 RRSRRQGIEDATFWRWHYFCVLL 283
           RR  ++ I  A  W WH F +LL
Sbjct: 179 RRPWKESITTAVRWVWHAFRILL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,967
Number of Sequences: 5004
Number of extensions: 62892
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)