Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h06
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51723| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   7e-34
SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.040
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)         29   4.5  
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)                      28   6.0  
SB_32589| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)                  28   7.9  
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   7.9  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   7.9  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_51723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score =  140 bits (340), Expect = 7e-34
 Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
 Frame = +1

Query: 238 TRKPRIVP-AFTIQALQKNTKVVPPPKCGVFDPLPPRPTMFRKCYQRGEFPVCIEFTITG 414
           T++P +V  AFT ++ Q  +KV  PP  G F      PT FRK Y+RG+FP+ +E    G
Sbjct: 220 TKRPEVVAEAFTTKSRQPFSKVKSPPAAGAFAERSVAPTAFRKFYERGDFPIALEHDTKG 279

Query: 415 KQLAWKVPIEKLDFHHYLPMFFDGLAEGTYPYSFIVERGIHDLVTKGSYKXXXXXXXXXX 594
            ++AWKV IEKLD+HHYLP+F DGL+E T+PY F   +G+HD++  G  K          
Sbjct: 280 NKIAWKVEIEKLDYHHYLPLFADGLSETTHPYEFFARQGVHDMLEHGGNKILPVIPQLII 339

Query: 595 XXKNALATKRPAVICHALKCIXMIV 669
             K ALAT++P V+C  LK +  +V
Sbjct: 340 PVKQALATRQPKVLCTTLKVLQHLV 364



 Score =  123 bits (296), Expect = 2e-28
 Identities = 53/124 (42%), Positives = 71/124 (57%)
 Frame = +1

Query: 298 VVPPPKCGVFDPLPPRPTMFRKCYQRGEFPVCIEFTITGKQLAWKVPIEKLDFHHYLPMF 477
           V P P  G F       T FRKCY RG+FP+ +E    G ++AWKV IEKLD+HHYLP+F
Sbjct: 22  VKPAPPAGAFKERQAPQTNFRKCYDRGDFPIALEHDTKGNKIAWKVEIEKLDYHHYLPLF 81

Query: 478 FDGLAEGTYPYSFIVERGIHDLVTKGSYKXXXXXXXXXXXXKNALATKRPAVICHALKCI 657
            +GL E ++PY F   +G+HD++  G  K            K AL T+ P V+C  LK +
Sbjct: 82  VEGLCETSHPYEFFARQGVHDMLEHGGSKVLPVIPQLIIPFKQALNTRNPKVVCTTLKAL 141

Query: 658 XMIV 669
             +V
Sbjct: 142 QHLV 145


>SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 355 FRKCYQRGEFPVCIEFTITGKQLAWKVPIEKLDFHHYLPMFFDGLAEGTYPYSFIVERGI 534
           F   Y  G  P  +       +L W  P + L F   L    +GL E  +PY+F+   G 
Sbjct: 87  FAAVYASGGVPCRLIHGSVKHKLQWDTPPDNLPFDPILITLAEGLRETKHPYTFVAREGF 146

Query: 535 HDLV 546
            +++
Sbjct: 147 REML 150


>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = +3

Query: 186 FQEFSEETEP*LSLWL*DEEAKNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVQKM 365
           FQ  +E++ P   + + D++    +  +  +I  + K  ATSK  + ++P +  +     
Sbjct: 167 FQRITEDSAPMERMKVRDKDVPYMTSEWKQAIRAKRK--ATSKFLKNKTPKNWENKRAAR 224

Query: 366 LSKRRISRLHRVHYYRKTIGLEGSHRETGLPSLPADVL*RPS 491
               R  R+   HY+RK  G+ G   +    S P D +  PS
Sbjct: 225 NEATRQRRIAIKHYWRKQYGIGGDKAKL---SSPDDFMDHPS 263


>SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 318 WRLRSPASETDDVQKMLSKRRISRLHRVHYYRKTIGLEGSHRETGLPSLPADVL*RPSR 494
           W  R  +++ +   K   + R S     H +     L  SHR+T +P LP+ V  +PSR
Sbjct: 118 WHARGCSADLEKGVKSNEEGRASSQPPQHSFSD---LSQSHRDTNIPYLPSSVHRQPSR 173


>SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)
          Length = 636

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 390 LHRVHYYRKTIGLEGSHRETGLPSLPADVL*RPSRG 497
           LHRV     T+ LEG     G P +PA ++ RP+RG
Sbjct: 44  LHRVIELIDTVDLEGG--PVGKPVVPAALMNRPTRG 77


>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 282 TKEHKSSATSKMWRLRSPASETDDVQKMLSKRRISRLH 395
           T EH SS+  +   L+S  +  D++QK++  R++ R H
Sbjct: 98  TSEHLSSSEKRFQNLKSADNGKDEIQKVV-LRKVERSH 134


>SB_32589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 273 TSITKEHKSSATSKMWRLRSPA-SETDDVQKMLSKRRISRLHRVHYYRKTIGLEGSHRET 449
           T++   HK  +   +WR RS   S   +  K  S+R I    R       IG E   R+T
Sbjct: 20  TTLQTNHKRLSKDALWRARSGRDSPAKEYLKQSSQRNIVTKDRA-IILPQIGSEDGARKT 78

Query: 450 GLPSLPADVL*RPSRGHLS 506
            L           SRGH++
Sbjct: 79  KLRKTTLHSTLASSRGHVT 97


>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
          Length = 773

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 573 RSPAANHSHKKCLGDEAPCSHLSRPK 650
           R P     HK C+GD+ P  H  R +
Sbjct: 576 RGPQDRRGHKGCMGDKGPRDHSRRAR 601


>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 160 CVPQSCGKDFRNSLKKPSPNY 222
           CV +SCGK+ +++ K+P+ N+
Sbjct: 635 CVTKSCGKNLKSAEKQPTINF 655


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 423 QLFSGNSELDADGKFASLITFSEHRR 346
           +LF G   LDA  K A+L+ FS H R
Sbjct: 770 KLFKGGRALDASDKEAALLGFSAHLR 795


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
 Frame = +1

Query: 262  AFTIQALQKNTK----VVPPPKCGVFDPLPPRPTMFRK 363
            A+T++ +++N +    +V PP+  +  P+PP+PT  +K
Sbjct: 1776 AYTLRVVRENLRTSSLLVTPPERSLQTPVPPKPTEAQK 1813


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +1

Query: 262  AFTIQALQKNTKV----VPPPKCGVFDPLPPRPTMFRK 363
            A+T++ +++N +     V PP+  +  P+PP+PT  +K
Sbjct: 919  AYTLKVIKENLRTSSLSVTPPERSLQTPVPPKPTEAQK 956


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 274 QALQKNTKVVPPPKCGVFDPLPPRPTMFRK 363
           ++L  ++  V PP+ G   PLPP+PT  +K
Sbjct: 748 ESLGASSLSVTPPEKGPQTPLPPKPTKAQK 777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,864,745
Number of Sequences: 59808
Number of extensions: 476152
Number of successful extensions: 1899
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)