Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h06
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20280.1 68417.m02962 transcription initiation factor IID (TF...    32   0.40 
At5g34970.1 68418.m04127 hypothetical protein similar to At5g368...    30   1.2  
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    30   1.6  
At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein si...    29   3.8  
At5g13950.1 68418.m01631 expressed protein                             28   6.6  
At5g48385.1 68418.m05980 expressed protein                             27   8.7  
At5g18270.2 68418.m02148 no apical meristem (NAM) family protein...    27   8.7  
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein...    27   8.7  
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    27   8.7  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   8.7  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    27   8.7  

>At4g20280.1 68417.m02962 transcription initiation factor IID
           (TFIID) 28 kDa subunit (TAFII-28) family protein similar
           to SP|Q15544 Transcription initiation factor TFIID 28
           kDa subunit (TAFII-28) (TAFII28) (TFIID subunit
           p30-beta) {Homo sapiens}; contains Pfam profile PF04719:
           hTAFII28-like protein conserved region
          Length = 210

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 237 DEEAKNRSGFYDTSITKEHKSSATSKMWRLRSPASE-TDDVQKMLSKRRISRLHRVHYYR 413
           DE+ +      D  +TK   SS  +KM ++++  S+ T+D        R S L R    +
Sbjct: 76  DEDDEEEEENMDVELTKYPTSSDPAKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKK 135

Query: 414 KTIGLEGSHRETGLPSL 464
             IG+ GS ++ G+P +
Sbjct: 136 LLIGVTGS-QKIGMPMI 151


>At5g34970.1 68418.m04127 hypothetical protein similar to At5g36850,
           At1g27780, At2g05560, At3g42730, At1g52020, At2g14770,
           At3g43390, At3g24390, At1g34740, At1g25886, At4g03300,
           At4g05280
          Length = 478

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 240 EEAKNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVQKMLSKRRISR 389
           E A+NRS    T IT+  ++ A S+MW     ++  D  Q   + + ++R
Sbjct: 419 EHAENRSNNRITKITRPQQADARSRMWSSNRSSNRQDMKQLYSTAQSVAR 468


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 136 AKMVLLPPCVPQSCGKDFRNSLKKPSPNYPYGYKTRKPRIV 258
           A++ +  P +  +CGK  +NS +   P+   G+ T+K  +V
Sbjct: 458 ARLKVKDPALQDTCGKASKNSFRSSFPSSKDGFSTKKHGLV 498


>At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase from GI:6714534 [Salix
           gilgiana]
          Length = 460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 190 RNSLKKPSPNYPYGYKTRKPRIVPAFTIQALQKNTKVVP 306
           RN +KK + + P G   R  +++PAF      +N K  P
Sbjct: 288 RNVVKKLAADPPVGTPARPGKVLPAFVFALYNENQKTGP 326


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 171 LWHTGRQQNHFSDNKSKKHDTQCKNVSS 88
           LW   +QQ + ++N  +KHD Q  N  S
Sbjct: 406 LWMEDKQQQYAAENPLQKHDVQYNNGES 433


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 304 PPPKCGVFDPLPPRPTMFRKCYQ 372
           PPP+   F+P P     +  CYQ
Sbjct: 525 PPPQTYTFNPAPAHGNFYANCYQ 547


>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 232 YKTRKPRIVPAFTIQALQKNTKVVPPPKCGVFDPLPP 342
           + +  P I P+F  Q  Q N K + PP   +  P+ P
Sbjct: 205 FSSLPPLIDPSFMSQTEQPNFKPINPPTYDISSPIQP 241


>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 232 YKTRKPRIVPAFTIQALQKNTKVVPPPKCGVFDPLPP 342
           + +  P I P+F  Q  Q N K + PP   +  P+ P
Sbjct: 205 FSSLPPLIDPSFMSQTEQPNFKPINPPTYDISSPIQP 241


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 376 GEFPVCIEFTITGKQLAW 429
           G  PV I+FT TGK +AW
Sbjct: 639 GSEPVAIDFTGTGKGIAW 656


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +1

Query: 208 PSPNYPYGYKTRKPRIVP-AFTIQALQKNTKVVPPPKCGVFDPLPP 342
           PSP+YP G     P   P      A        PPP  G   P+PP
Sbjct: 72  PSPHYPQGQPYSSPAYPPHQPPFNAGANGNSQFPPPSTGA--PIPP 115


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +1

Query: 208 PSPNYPYGYKTRKPRIVP-AFTIQALQKNTKVVPPPKCGVFDPLPP 342
           PSP+YP G     P   P      A        PPP  G   P+PP
Sbjct: 72  PSPHYPQGQPYSSPAYPPHQPPFNAGANGNSQFPPPSTGA--PIPP 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,296
Number of Sequences: 28952
Number of extensions: 346085
Number of successful extensions: 1062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)