Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h05
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    29   0.43 
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.99 
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    28   1.3  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   4.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   5.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.2  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   9.2  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 267 GKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 422
           G   I K  + +   P  YAP  C    +A +  C T  LS +P D  K  R
Sbjct: 302 GLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKR 353


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 258 CCCGKPPIVK--PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYK 383
           CC   PP +   P +  P+I    +P  CY K   P  G T+Y+
Sbjct: 11  CCWVSPPSLTRLPAFPSPRI---LSPCYCYNKRIRPFRGLTSYR 51


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +3

Query: 393 LPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCH--HDMWGQ 566
           LP D   +   + ++  PNI+PS E  +   +  +     P   T +I   H     W  
Sbjct: 41  LPTDPKASSLHKPQEQQPNIIPSKEEDKKPVINSMKLPSIPAPGTDNINESHIPRGYWKH 100

Query: 567 GPMQNITTQRHDYVP 611
             +  I  + HD  P
Sbjct: 101 PAVDKIAKRLHDQAP 115


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -1

Query: 280 MGGFPQQQDRHGQFGLMSPSMGFPSRRPDLIPAAGHGRHS 161
           MGG     D  G FG  +   G P    ++    G G H+
Sbjct: 146 MGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHA 185


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +3

Query: 549 HDMWGQGPMQNITTQRHDYVPKPSI 623
           HD+W       +  ++ DY P P +
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKL 287


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 371  ASLYGG*WFYVASSRRVRLWDFWLLV 294
            +S+YG  W ++ S+  V  W  +LLV
Sbjct: 2200 SSVYGRSWAFMWSAHNVHKWAMFLLV 2225


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
 Frame = +3

Query: 303 PKIPESYAPRRC--------YIKPSAPVEGCTTYKLSYLPVDGCKNLRGEVKKPSPNIVP 458
           P+IP +Y P++            P+ P +   T +L  +P     NL  +V  P P   P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP-MPSRNVNNLGSQVNIPPPPATP 279

Query: 459 SCEP 470
           S  P
Sbjct: 280 SQPP 283


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 8    LFSCHIFVLIFF---LFS*NVLKSFQFISYFDIFLELYFLYD 124
            L S H ++ ++    LFS  +  SF F+  + I L +YFL D
Sbjct: 876  LASIHFWIALWSGNSLFSLKLPSSFSFLWGYAILLFIYFLMD 917


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 439 LRPTLYRAVNLWKGVPFKS 495
           LRP  Y+  N W G PF++
Sbjct: 347 LRPHAYQHFNTWMGDPFRA 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,188
Number of Sequences: 5004
Number of extensions: 69260
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)