Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h05
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 33 0.14
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.19
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 30 1.3
01_06_1608 - 38612754-38616947,38617030-38617095 29 2.4
05_04_0233 + 19265553-19265703,19265805-19265826,19266788-192669... 29 4.1
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 29 4.1
06_03_0219 - 18227559-18227858,18227864-18228340 28 5.4
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 5.4
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368... 28 5.4
08_01_0070 + 490655-493165 28 7.2
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 28 7.2
06_02_0155 + 12380452-12381012 27 9.5
02_01_0393 - 2863335-2864534 27 9.5
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 27 9.5
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 376 VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQ 242
++H + GF H+LG + I C G+T G P +Q RHG+
Sbjct: 35 LLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGR 79
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 153 IMPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP-PIVKPCY-KQPKIPESYA 326
+ P LP P K + P D +P PC C C KP P KPC+ ++PK
Sbjct: 77 VWPPPLPQPPPPCKPPPCEKPP--EDCKPK-PCHCCSCEKPKPKPKPCHCEKPKPCHCEK 133
Query: 327 PRRCYIKPSAPVE 365
P+ C P E
Sbjct: 134 PKPCEKPPPCKPE 146
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 482 YRSKVVIPTEPGVRDAVDPALPPRHVGPG-SHAEHHHTTTRLRAQAE 619
Y+S P++ V +PALPP PG SH E +HT + + ++
Sbjct: 88 YKSMSENPSQTFVYRVKNPALPPTLRQPGWSHGEEYHTVRAIGSSSK 134
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 469 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 386
GS +G+ LG G S RF+H +GR++
Sbjct: 1259 GSDVGSSLGSGGDMSQPRFIHNESGRFE 1286
>05_04_0233 +
19265553-19265703,19265805-19265826,19266788-19266914,
19267814-19267904,19268008-19268097,19268194-19268294,
19268945-19269081,19271315-19271511,19271600-19271621,
19272343-19272466,19273158-19273248,19273378-19273467,
19273562-19273662,19278576-19278716
Length = 494
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 261 CCGKPPIVKPCYKQPKIPESYAPRRCYIKPSA 356
CC PP + P + K+ ES+ + Y+ +A
Sbjct: 6 CCANPPTLNPAGGEGKVVESFGGIKAYVAGAA 37
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 503 PTEPGVRDA-VDPALPPRHVGPGSH 574
P++P +R DP P RH GP SH
Sbjct: 22 PSQPALRSLNQDPPKPARHTGPRSH 46
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +3
Query: 156 MPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRR 335
+P C P PAA S +R RP P PP + + P+ P PRR
Sbjct: 71 LPRCRPPPAACAASTVR---------RPAAPSPPPASPPPPPPRLALRFPRRPPELPPRR 121
Query: 336 CYIKPSAPVEGCTTYKLSYLP 398
+ SAP +L+ P
Sbjct: 122 RPSRFSAPAASSRLSRLARAP 142
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 469 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 386
GS +G LG G S RF+H +GR++
Sbjct: 1255 GSDVGGSLGSGGDMSQPRFIHNESGRFE 1282
>01_01_0501 -
3682100-3682148,3682263-3682341,3682434-3682511,
3682770-3682866,3682944-3683029,3683310-3683381,
3683451-3683520,3683988-3684110,3684212-3684370,
3684443-3684730,3685652-3685725,3686107-3686344
Length = 470
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 288 PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 422
P +QP++ +YA RR SA + G T+ + + +GC+ +R
Sbjct: 43 PRKQQPQV--AYALRRASATSSAHLHGATSRSFTGVATEGCEQIR 85
>08_01_0070 + 490655-493165
Length = 836
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 408 CKNLRGEVKKPSPNIVPSCEPMEGC---TVQKLSYLPN 512
C++L G V P+P P P+ GC TV++LS L N
Sbjct: 442 CRDLEGAVIMPAPEASPPPPPL-GCEEFTVKELSRLTN 478
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 191 QVGSSRRKAH*RRHETELPMPILLLWETAHC*AVLQATKNPRVVRAETMLHKTISPRRGM 370
++ SR+K R + E + +L WE C V ++ V A + S G
Sbjct: 69 EMAESRKKKRKRNYSLEKELTVL--WEKMRCHNVSSTERSKLVSEALRKMDGKYSEIAGS 126
Query: 371 HDLQAVVSTCRRM 409
H V+ TC ++
Sbjct: 127 HVTARVLQTCVKL 139
>06_02_0155 + 12380452-12381012
Length = 186
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 171 PCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCY 341
P PA + +R P GD + + P + GKPP+V P P+ P ++ +
Sbjct: 57 PAPATSPDTEVR--APTYGDKQISPP-KEGAAGKPPMVVPAANHPQAPTGEEAKKAH 110
>02_01_0393 - 2863335-2864534
Length = 399
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 234 RPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPV 362
RP P S ++P KQP +P S A R Y +A V
Sbjct: 90 RPRPPASSTAAAALVELEPQQKQPPVPASAAATRAYSSSAALV 132
>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 305 WLLVTRLNNGRFPTAARSAWAVRSHVAVNGLSVSKTRLDTRRWAW 171
WL V+R+ NGRF A R + G S+ L+ R+AW
Sbjct: 1518 WLYVSRVCNGRFGVLVLEIVAGRRN---RGFCESEINLNLLRYAW 1559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,234,860
Number of Sequences: 37544
Number of extensions: 508913
Number of successful extensions: 1459
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -