Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h05
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52) 42 4e-04
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 31 0.79
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_39389| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12) 30 1.8
SB_1211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8) 29 2.4
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) 29 3.2
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 29 3.2
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.2
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31) 29 4.2
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 28 5.6
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1) 28 7.4
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 7.4
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06) 27 9.7
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
Length = 460
Score = 41.9 bits (94), Expect = 4e-04
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +3
Query: 315 ESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNL-RGEVKKPSPNIVPSCEPMEGCTVQ 491
ES P Y P +G T ++ ++ P D NL R + KP + M+G T+
Sbjct: 117 ESAKPACTYQPHDKPFQGSTVHQDTFRPWD--LNLSRVKSMKPDTQSMARDGRMDGRTIH 174
Query: 492 KLSYLPNPVCVTQSIRPCHHDMWGQ-GPMQNITTQRHDYVPKPSILRES 635
+ + + V +IRP + D+ GPM+N TT R DY K + +S
Sbjct: 175 QTDFPGHSVPRRPAIRPPNSDLRANCGPMENDTTTRLDYTKKQILPAQS 223
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 420 RGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCHHDMWGQGPMQNITTQRH 599
R ++ P+ ++ +C PME T +L Y + QS +P + P Q ITT +H
Sbjct: 186 RPAIRPPNSDLRANCGPMENDTTTRLDYTKKQILPAQSAKPVYRRPSTGPPFQGITTCQH 245
Query: 600 DY 605
D+
Sbjct: 246 DF 247
Score = 37.1 bits (82), Expect = 0.012
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Frame = +3
Query: 216 PIDGDMRPNCPCRSCCCGKPPIV-KPCYKQPKIPESYAPRRC-----YIKPSAPVEGCTT 377
P +P P RS P+ + Y+ I YAP + +IKP VE +T
Sbjct: 44 PFGERTKPIKPDRSVRISDAPLEDRTHYRLDYISHKYAPPKKREKDRWIKPDGRVEDEST 103
Query: 378 YKLSYLPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVT--QSIRPCHH 551
YK Y G E KP+ P +P +G TV + ++ P + ++ +S++P
Sbjct: 104 YKHDY---PGRMVAPAESAKPACTYQPHDKPFQGSTVHQDTFRPWDLNLSRVKSMKPDTQ 160
Query: 552 DMWGQGPMQNITTQRHDYVPKPSILR 629
M G M T + D+ P S+ R
Sbjct: 161 SMARDGRMDGRTIHQTDF-PGHSVPR 185
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 31.9 bits (69), Expect = 0.45
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Frame = +3
Query: 243 CPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKN-- 416
CP C +PC+ Y R KP P C TY+LSY P C
Sbjct: 1291 CPKGHFCPTGSSGPQPCWPGTYADTEYNQFRNNCKPCIPGMYCPTYRLSY-PSGNCSEGY 1349
Query: 417 --LRGEVKKPSPNIVPSCEPMEGC 482
GE K+ P+ C+P C
Sbjct: 1350 YCPAGETKQSPPD--KQCQPGHYC 1371
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 450 CWAKVSLLLPVGFCIRRQVDTTACKS-CIPLRGLMVLCSIVSARTTLGFLVA 298
C+ +V + + C+ V AC C+P RGLM +C + A + FL+A
Sbjct: 378 CFDRVLMPMCSPLCVHVDVFPIACSCRCVPHRGLMSMCFLSRAHVDV-FLIA 428
Score = 31.1 bits (67), Expect = 0.79
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -2
Query: 429 LLPVGFCIRRQVDTT----ACKSCIPLRGLMVLCSIVSARTTLGFLVACNTA*QWAVSHS 262
L+ + F R VD +C+ C+P RGLM +C + A L FL+AC+ + SH
Sbjct: 411 LMSMCFLSRAHVDVFLIAGSCQ-CVPHRGLMSMCFLSRAHVDL-FLIACSCRCFPSRSHV 468
Query: 261 SKIGMGSSVSC 229
+ S C
Sbjct: 469 DVFPIAFSCRC 479
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 390 TTACKSCIPLRGLMVLCSIVSARTTLGFLVACN 292
T +C+ C+P R LM +CS A + FL+AC+
Sbjct: 279 TCSCR-CVPHRVLMSMCSASRAHVDV-FLIACS 309
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/106 (25%), Positives = 37/106 (34%)
Frame = +3
Query: 237 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKN 416
P+CP C PP+V P + P C K S+P C T S + C
Sbjct: 1783 PSCPSTCCIKNSPPVVCPKSCETTCTPD-CPVMC-CKNSSPATECPTICASKC-ISKCPE 1839
Query: 417 LRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCHHD 554
+ +P P ++ S P Q P C T + C D
Sbjct: 1840 KCCKQPEPQPALL-STTPTPPPPPQPHQQQQQPTCSTSCLTLCTPD 1884
Score = 29.5 bits (63), Expect = 2.4
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Frame = +3
Query: 237 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKN 416
P CP R CC G + K P + C KP P CTT LS P C
Sbjct: 1622 PECPVR-CCSGSQTLDLGVSKT--CPSWCSVSSC--KPDCPARCCTTEPLSACPAT-CS- 1674
Query: 417 LRGEVKKPSPNIVPS-CEPMEGCTVQKLSYLPNPVCVTQSI 536
+ P I S C P C+ Q P C T +
Sbjct: 1675 -PDSCRPECPLICCSVCPP--NCSAQSCGNFCPPKCCTSQL 1712
>SB_39389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 426 EVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCHHDMWGQGP 572
E+++P P IV EP+ Q++ + P P V Q ++P WG P
Sbjct: 84 EIEEPKPEIVQP-EPVTAEPEQEIKF-PKPETVEQELKPQTTGRWGPTP 130
>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1604
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 595 RCVVMFCMGPWPHMSWWQGRIDCVTHTG 512
RCVV PWP +SW++G I VT G
Sbjct: 695 RCVVSG--SPWPKISWYRGGIPIVTCEG 720
>SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12)
Length = 531
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 162 ECLPCPAAGIKSGLRDGKPIDGDMRPNCPC----RSCCCGKPPIVKPCYKQPKIPES 320
+C P P ++D K +DG R C R+C KP P K+ KIP +
Sbjct: 302 KCDPSPCENSGKCIKDAKRLDG-YRCKCTSDFTGRNCQVSKPDAENPIVKRTKIPRA 357
>SB_1211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 562 ARVPCRTSPHNDTTTCPSRVYYERAL 639
A+ CRTS ++ T+TC +RVY + L
Sbjct: 22 AQSTCRTSKYHVTSTCRTRVYRQHVL 47
>SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)
Length = 291
Score = 29.5 bits (63), Expect = 2.4
Identities = 37/154 (24%), Positives = 60/154 (38%)
Frame = +1
Query: 163 SVYHAQRRVSSRVFETESPLTAT*DRTAHADLAAVGNRPLLSRVTSNQKSQSRTRRDDAT 342
+VY AQR + V++ + T + V +R T K+Q TR
Sbjct: 77 TVYKAQRNTRTTVYKAQRNTRTTVYKAQRNTRTTVCKAQRNTRTTVC-KAQRNTRTTVCK 135
Query: 343 *NHQPP*RDARLTSCRIYLSTDAKTYGEK*RNLRPTLYRAVNLWKGVPFKSCHTYRTRCA 522
H R T +T Y + RN R T+Y+A ++ + + S H RTR
Sbjct: 136 AQHI-----TRTTVYMAQHNTRTTVYKAQ-RNTRTTVYKAQHITRTTVYMSQHNTRTRVY 189
Query: 523 *RSRSGPATTTCGARVPCRTSPHNDTTTCPSRVY 624
+++ TT A+ RT+ + + VY
Sbjct: 190 -KAQHNTRTTVYKAQRNTRTTVYKAQRNTRTIVY 222
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/93 (26%), Positives = 39/93 (41%)
Frame = +2
Query: 275 AHC*AVLQATKNPRVVRAETMLHKTISPRRGMHDLQAVVSTCRRMQKPTGRSKETFAQHC 454
A C A+ A +R + +L SP G + ++ VVS+ PT RS + + C
Sbjct: 963 AVCVALRVAMICAACIRDDVLLIGIDSPSLGSNGIRGVVSS-----SPTPRSADAPGKTC 1017
Query: 455 TEL*TYGRVYRSKVVIPTEPGVRDAVDPALPPR 553
+ T + R+ V D +DP PR
Sbjct: 1018 LTVRTIAKRLRTLCAYTYTMSVSDKLDPQRTPR 1050
>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 1217
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 290 RLNNGRFPTAARSAWAVRSHVAVNGLSVSKTRLDTRR 180
R ++ TA+ SAW+ S + + GL VS L TRR
Sbjct: 1127 RADDAAAGTASNSAWSASSVIGLAGLLVSSIGLYTRR 1163
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +3
Query: 237 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPR-RCYIKPSAPVEGCTTYKLSYLPVDGCK 413
P C++C C V P P +P + RC P+ + C T + Y V K
Sbjct: 859 PKPQCKACECYVQGTVSPPGHDPTLPFPCDDKGRCTCLPNVSGDKCDTCRPEYWNVASGK 918
Query: 414 NLRGEVK 434
RG +K
Sbjct: 919 VWRGALK 925
>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 879
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 429 LLPVGFCIRRQVDTT----ACKSCIPLRGLMVLCSIVSARTTLGFLVACN 292
L+ + F R VD +C+ C+P RGLM +C A L FL+AC+
Sbjct: 28 LMSMCFLSRAHVDVFLIAGSCR-CVPHRGLMSMCFPSRAHVDL-FLIACS 75
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 411 CIRRQVDTTACKS-CIPLRGLMVLCSIVSARTTLGFLVA 298
C+ V AC C+P RGLM +C + A + FL+A
Sbjct: 8 CVHVDVFPIACSCRCVPHRGLMSMCFLSRAHVDV-FLIA 45
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +3
Query: 177 PAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRC 338
P G+ S G+ +D P+ PC C PP K C Q P C
Sbjct: 913 PPTGVTSS--SGEAMDVTASPSAPCNGFSCDSPPYSK-CVVQNDKPTCVCQLNC 963
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 533 DPALPPRHVGPGS---HAEHHHTTTRLRAQA 616
+PA P +GP S + EHHHT +++ +A
Sbjct: 817 EPAATPESMGPESIIINTEHHHTPAKVKPRA 847
>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
Length = 414
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 381 KLSYLPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQ 491
KL Y PV C N R E+ K VP + GC ++
Sbjct: 222 KLVYWPVSNCGNFRDEIAKKLNEFVP-LDVYGGCRIR 257
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 488 SKVVIPTEPGVRDA--VDPA-LPPRHVGPGSHAEHHHT 592
S ++ P+ P V+ + V P +PP H P SHA HT
Sbjct: 404 SSMMTPSRPSVQPSSMVSPVPIPPHHGTPDSHALPQHT 441
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +2
Query: 242 LPMPILLLWETAHC*AVLQATKNPRVVRAETMLHKTISPRRGMHDLQAVVSTCRRMQKPT 421
+P + +WE AHC A + RV A +L + + RGM L V ++
Sbjct: 152 MPKCVQAVWEKAHCALGEHAFREGRVEEAIELL-EPVKSIRGMFHLAQVYCYLATVEIQA 210
Query: 422 GRSKETFAQHC 454
S++ ++ C
Sbjct: 211 AASEDLDSEGC 221
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 153 IMPECLPCPAA-GIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVK 287
I+P+ +P A G K L + D +PNCP CC P VK
Sbjct: 350 ILPDMVPLRVAMGYKKSLPCPRSCDRYCKPNCPI-LCCRSNPFRVK 394
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 499 DNF*TVHPSIGSQLGTMLGEGFFTSPRRFLHPSTGRYDSL*VVHPSTGADG 347
DN +H S+G G +G +FT+ R H + +VH ++G G
Sbjct: 364 DNVFLLHSSLGFSEGANVGITYFTAYRALCHRLGAKPGETVLVHGASGGVG 414
>SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1)
Length = 268
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = +2
Query: 287 AVLQATKNPRVVRAETMLHKTISPRRGMHDLQAVVSTCRRMQKPTGRSKETFAQHCTEL* 466
AV +A +R + ++ SP G + ++ VVS+ PT RS ++ + C +
Sbjct: 11 AVCEAVLCAACIRDDVLVIGIDSPSSGSNGIRGVVSS-----SPTPRSADSPDKTCLTVR 65
Query: 467 TYGRVYRSKVVIPTEPGVRDAVDPALPPR 553
T R+ V D +DP PR
Sbjct: 66 TIATRLRTLCAYIYTMSVSDKLDPQQTPR 94
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +2
Query: 320 VRAETMLHKTISPRRGMHDLQAVVSTCRRMQKPTGRSKETFAQHCTEL*TYGRVYRSKVV 499
VR + ++ SP G + ++ VVS+ PT RS + + C + T R+
Sbjct: 589 VRDDVLVIGIDSPSSGSNGIRGVVSS-----SPTPRSSDAPGKTCLTVRTIATRLRTLCA 643
Query: 500 IPTEPGVRDAVDPALPPR 553
V D +DP PR
Sbjct: 644 YAYTMSVSDKLDPQRTPR 661
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +1
Query: 214 SPLTAT*DRTAHADLAAVGNRPLLSRVTSNQKSQSRTRRDDAT*NHQPP*RDARLTSCRI 393
+PLT R AH + GN +S T + S + R D +HQP R A L R
Sbjct: 365 APLTQK--RKAHCAVVLHGNLYAISGCTYDNDSLASVERLDPNVDHQPWQRVASLRHHRK 422
Query: 394 YLSTDAKT 417
Y A T
Sbjct: 423 YACAVAST 430
>SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06)
Length = 101
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 231 MRPNCPCRSCCCGKPPIVKP 290
M NCP CG PPI+ P
Sbjct: 33 MMRNCPASCGFCGSPPILSP 52
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 502 TYRTRCA*RSRSGPATTTCGARVPCRTSPHNDTTTC 609
+YR C + GP +C C TS HN T C
Sbjct: 850 SYRCSCFPGYQQGPKNDSCLDVDECSTSTHNCTQIC 885
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 375 TYKLSYLPVDGCKNLRGEVKKPSPNIVPSCEPME--GCTVQKLSYLPNPVCVTQSIRP 542
T K +PV + + + PSP + P+ P + C++ + +L P Q + P
Sbjct: 972 TVKAESMPVPASRQSKAPIPHPSPPMQPAKPPRQHTQCSIDPVPHLKPPGPTEQPVPP 1029
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,297,475
Number of Sequences: 59808
Number of extensions: 589638
Number of successful extensions: 1863
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -