Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h05
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 33 0.21
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 33 0.21
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 33 0.21
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 31 0.49
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 31 0.49
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:... 28 6.0
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 28 6.0
At3g59960.1 68416.m06692 SET domain-containing protein low simil... 27 7.9
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 27 7.9
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 27 7.9
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = -1
Query: 406 PSTGRYDSL*VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQFGLMS 227
PS G Y + HPS+G + + SG HG GG PQQ G +G
Sbjct: 95 PSPGGYGA----HPSSGPSDYGGYGGAPQQSG------HGGGYGGAPQQSGHGGGYGAPP 144
Query: 226 PSMGFPSRRPDLIPAA 179
P + S L+P+A
Sbjct: 145 PQASYGSPFASLVPSA 160
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = -1
Query: 406 PSTGRYDSL*VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQFGLMS 227
PS G Y + HPS+G + + SG HG GG PQQ G +G
Sbjct: 95 PSPGGYGA----HPSSGPSDYGGYGGAPQQSG------HGGGYGGAPQQSGHGGGYGAPP 144
Query: 226 PSMGFPSRRPDLIPAA 179
P + S L+P+A
Sbjct: 145 PQASYGSPFASLVPSA 160
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = -1
Query: 406 PSTGRYDSL*VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQFGLMS 227
PS G Y + HPS+G + + SG HG GG PQQ G +G
Sbjct: 95 PSPGGYGA----HPSSGPSDYGGYGGAPQQSG------HGGGYGGAPQQSGHGGGYGAPP 144
Query: 226 PSMGFPSRRPDLIPAA 179
P + S L+P+A
Sbjct: 145 PQASYGSPFASLVPSA 160
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 31.5 bits (68), Expect = 0.49
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 424 PRRFLHPSTGRYDSL*VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGG-FPQQQDRH 248
PR L P G S P+ G G + H + G FG G ++GG P QQ
Sbjct: 1000 PRVPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQPGNHG-FGAG-RGTSVGGHLPHQQATQ 1057
Query: 247 GQFGLMSPSMGFPSRRPDLIPAAG 176
G + PS+ FP P+ P+ G
Sbjct: 1058 HNVGTIGPSLNFPLDSPNSQPSPG 1081
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 179 SGGYQVGSSRRKAH*RRHETE-LPMPILLLWETAHC*AVLQATKNPRVVRAETMLHKTIS 355
+GG GS R+ R ++ LP+P LL+ T A +P V R+ T+S
Sbjct: 336 AGGSTTGSPTRRLDDNRQQSHRLPLPPLLISNTCPFSPTYSAATSPSVPRSPARAEATVS 395
Query: 356 P 358
P
Sbjct: 396 P 396
>At4g33200.1 68417.m04727 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]
Length = 1522
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 488 SKVVIPTEPGVRDAVDPALPPRHVGPGSHAEHHHTTTRLRAQAEYTTREL 637
S V+P + R + P +H+ P SH+ ++L A+ EL
Sbjct: 1074 SSAVVPAQNDRRSVFETPTPSKHIMPFSHSLSESRRSKLTAERNLENYEL 1123
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 273 PPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSY 392
P +V C+K+P P+ I PSAP G +Y+LSY
Sbjct: 264 PLVVLQCFKEP--PQGLFWTVNCIAPSAPGVGKFSYELSY 301
>At3g59960.1 68416.m06692 SET domain-containing protein low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain
Length = 352
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +3
Query: 240 NCPCRSCCCGKPPIVKPC-YKQPKIPESYAPRRCYIKPSAP 359
+C C + CC K KPC K + E+ P C + P
Sbjct: 237 DCYCGAVCCRKKLGAKPCKTKNTTLEEAVKPVACKVTWKTP 277
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 564 GPTCRGGRAGSTASRTPGSVGMT 496
GP RGGR G+T+ T G+ T
Sbjct: 162 GPASRGGRGGATSKSTAGARSST 184
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 27.5 bits (58), Expect = 7.9
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Frame = +3
Query: 270 KPPIVKPCYKQPKI-PESYAPRRCYIKPS--APVEGCTTYKLSYLPVDGCK-NLRGEVKK 437
KP + P Y +P + P +Y P Y KP+ APV YK + P K L V K
Sbjct: 67 KPTLSPPVYTKPTLPPPAYTP-PVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFK 125
Query: 438 PSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRP 542
P+ + +P TV K + P PV S+ P
Sbjct: 126 PTLSPPVYTKPTLSPTVYKPTLSP-PVNNKPSLSP 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,412
Number of Sequences: 28952
Number of extensions: 385306
Number of successful extensions: 996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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