Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h04
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.1  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/56 (16%), Positives = 25/56 (44%)
 Frame = +1

Query: 514 EVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFP 681
           ++ DN+ + H+G    N+   Q +   N++ +++          + L++   +  P
Sbjct: 358 DLTDNNELFHLGSDEVNLTCWQDTKSANKIAMKLFWAQYTNKMIDRLKNANNNELP 413


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 592 GLKKLELRSH*SCPNPRE*PRNYQVLPPTAPVYKLAP 482
           GL K+  +      N +  P++   LPP   ++ +AP
Sbjct: 205 GLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAP 241


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 89  ACEFQLIIVEFR 54
           AC F +IIV+FR
Sbjct: 340 ACTFLIIIVQFR 351


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 592 GLKKLELRSH*SCPNPRE*PRNYQVLPPTAPVYKLAP 482
           GL K+  +      N +  P++   LPP   ++ +AP
Sbjct: 153 GLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAP 189


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 592 GLKKLELRSH*SCPNPRE*PRNYQVLPPTAPVYKLAP 482
           GL K+  +      N +  P++   LPP   ++ +AP
Sbjct: 336 GLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAP 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,896
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)