Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h04
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0279 + 3743025-3745169                                           30   2.0  
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830...    29   4.5  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    29   4.5  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    28   7.9  

>04_01_0279 + 3743025-3745169
          Length = 714

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 318 TSHVAVSVYKAVS---RAQHVPLGDQRASARQLT 226
           T HVA  +Y AVS   R+     GD+ A+ARQLT
Sbjct: 477 TWHVATDIYLAVSGGDRSSPANAGDRAAAARQLT 510


>09_04_0232 -
           15882589-15882720,15882799-15882889,15882987-15883087,
           15883494-15883592,15883693-15883830,15883918-15884508,
           15884819-15884989,15885068-15885203,15885561-15885592,
           15886280-15886336,15886434-15886686,15886762-15886850,
           15887181-15887234,15887498-15887689,15887777-15887938
          Length = 765

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 210 NCVGISFDCGRRAPNNASIRSGAQRKR 130
           NCV ++  CG+ A   A  RSG + KR
Sbjct: 11  NCVLLAVLCGKHAEKRAQARSGLEAKR 37


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 553 PNPRE*PRNYQVLPPTAPVYKLAPRSRSGSQ 461
           P P   P N+   PPT P Y L P ++   Q
Sbjct: 63  PEPEPTPVNHHYPPPTTPAYSLPPPAQPYGQ 93


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -2

Query: 438 DIVVSDRDVVPLVDDDHRHGVNTSPRV*N-----TASGANAEQCGTSHVAVSVYKA 286
           D+++SDRD +  + D  +  V T P   N       S A+ +Q G ++   + Y A
Sbjct: 668 DVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQWGAAYAPQATYPA 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,036
Number of Sequences: 37544
Number of extensions: 433868
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)