Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h04
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At5g38180.1 68418.m04601 protease inhibitor/seed storage/lipid t...    29   2.9  
At5g38195.1 68418.m04604 protease inhibitor/seed storage/lipid t...    29   3.8  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    29   3.8  
At2g30100.1 68415.m03663 ubiquitin family protein low similarity...    28   5.0  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    28   6.6  

>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 564 ISPAPTHVNNRGIIRYFRPLHRYTSL 487
           ISP+P  ++  G+ R FR LH+ TS+
Sbjct: 255 ISPSPKKLDRGGLPRKFRKLHKMTSM 280


>At5g38180.1 68418.m04601 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile: PF00234 protease inhibitor/seed storage/LTP
           family
          Length = 95

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 442 VLVLSSPVTLSASVAQACIPVQ 507
           ++VLSSP+ + A   Q+C+P++
Sbjct: 13  IIVLSSPILMKAEETQSCVPME 34


>At5g38195.1 68418.m04604 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 95

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 436 IAVLVLSSPVTLSASVAQACIPVQ 507
           + ++V+SSP+ + + V+ +CIP +
Sbjct: 11  VVIVVMSSPILIKSEVSSSCIPTE 34


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 988

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 429 VSDRDVVPLVDDDHRHGVNTSPRV 358
           VS+RD+V LV+DD R     SP V
Sbjct: 414 VSERDIVELVEDDVRSAGGLSPNV 437


>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
           SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
           (Ras-binding protein Sur-8) {Homo sapiens}; contains
           Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
           repeat, PF00560: Leucine Rich Repeat
          Length = 897

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 332 LNNVGLATLPLVSIKQCPALST 267
           LNN GL TLP    K C  LST
Sbjct: 824 LNNTGLKTLPSALFKMCLQLST 845


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 302 LVSIKQCPALSTCLLVISEPPH 237
           L+S K CP     +L+I+EPPH
Sbjct: 167 LLSHKNCPLCRAPVLLITEPPH 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,766
Number of Sequences: 28952
Number of extensions: 322904
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)