Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h02
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 32 0.092
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 29 0.86
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.5
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 4.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 6.0
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 8.0
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 8.0
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 31.9 bits (69), Expect = 0.092
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 308 LDSSVYLWAHASSRCMHTAEGGACGRVRQALCTTHGARPAATSD 177
L SS+YLW+ AS + + + GA V L T G + A +D
Sbjct: 143 LASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQLAVGTD 186
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 3 WFSIIWCFLNKLKMFS*SNRSTDPHN 80
WF+II+C NKLK + + D HN
Sbjct: 237 WFTIIYCADNKLKAMHMISPTLDAHN 262
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 609 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 517
K + +Q+P H PH+H + + PP D I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 603 HSNQRPPQHRPHEHSRPVLTPP 538
H + RPP H PH H PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 639 HVAWHEQRQVKQHSNQRPPQHRPHEHSRP 553
H +HE+RQ + PP R E S P
Sbjct: 28 HTGFHEKRQGASSESLIPPAQRSSEESMP 56
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 582 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 451
Q PH HS +++ D+ IA+P + V L+ H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Frame = -3
Query: 298 PCTCGRTR--PAGAC 260
PCTCGRTR P AC
Sbjct: 621 PCTCGRTRLYPPVAC 635
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 624 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 538
+ R+ ++ PPQ E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -2
Query: 305 DSSVYLWAHASSRCMHTAEGGACGRVRQALCTTHGARPAA 186
D ++ +W +C+H +G A +L T H R A
Sbjct: 289 DKTIRIWDAKDGKCLHILKGHAARVNHLSLSTEHVLRSGA 328
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 454 GSFTQSLNISTLILKISLARRFCRLISNPMACW 356
GS T SLN S L KISL +C + W
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFW 448
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 272 SRCMHTAEGGACGRVRQALCTTHGARPAATSDV-TSTCSNI 153
S C H A G++R T HG RP +T DV TS S++
Sbjct: 220 SLCFHFATITHYGQLR-FYDTKHGRRPVSTFDVSTSPLSHV 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,751
Number of Sequences: 5004
Number of extensions: 37545
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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