Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h02
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 33 0.17
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 32 0.39
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 32 0.51
12_01_0615 + 5072267-5073253 30 1.6
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 30 2.1
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 30 2.1
05_01_0563 + 4914032-4914151,4914322-4914402,4915097-4915181,491... 29 3.6
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 29 4.8
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 29 4.8
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 29 4.8
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 609 KQHSNQRPPQH-RPHEHSRPVLTP 541
KQHS+ PP H RPH+ S PV++P
Sbjct: 192 KQHSSNLPPSHHRPHKGSFPVISP 215
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 222 LPHAPAGPALRGVHAPAGRVRPQVHGGIEDVEIRLNNLHFIKNIYQHAIGLEIKRQ 389
+P +P A+RG HA A V + +E+ E+RL + Q + G+ + R+
Sbjct: 207 MPESPRWLAMRGRHADARAVLVRTSDSVEEAELRLEEIKRAVEAPQESAGVGVWRE 262
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 621 QRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTV-LRRTVDRQLDVEHLPSS 454
+R+ +Q R +H H RP+L PRD R + TT + + +++D E+ S
Sbjct: 12 RRRREQQQQGREQRHHHHHRRRPLLLQPRDERCVSCTTFNILAPIYKRMDSENCRES 68
>12_01_0615 + 5072267-5073253
Length = 328
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 496 YGRSPTRRRALAEFGSFTQSLNISTLILKISLARRFC 386
YGR+P RRR+ E G T ++ L+L+ RR C
Sbjct: 72 YGRTPFRRRSRRESGKPTPLRDLIGLLLEKDPGRRLC 108
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 222 LPHAPAGPALRGVHAPAGRVRPQVHGGIEDVEIRLNNL 335
+P +P A+RG HA A V + +E+ E+RL +
Sbjct: 202 MPESPRWLAMRGRHADARAVLVRTSDSVEEAELRLEEI 239
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 508 CTAPY-GRSPTRRRALAEFGSFTQSL 434
C APY G+S TRR+ L + FTQ L
Sbjct: 126 CDAPYNGQSNTRRKGLMTYKQFTQKL 151
>05_01_0563 +
4914032-4914151,4914322-4914402,4915097-4915181,
4915595-4915662,4915904-4916005,4916300-4916389,
4916632-4916706,4916782-4916814,4917293-4917367,
4917954-4918004,4918247-4918327
Length = 286
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 288 QVHGGIEDVEIRLNNLHF-IKNIYQHAIGLEIKRQKRRAKEIFNIS-VLIFRD*VKEPNS 461
Q+ + D ++L N+ IKNI Q GL+ K AK+ F+ + V+ +++
Sbjct: 178 QIRDDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGG 237
Query: 462 ASARRLVGDRPYG 500
RL G + G
Sbjct: 238 KLPERLEGSKMAG 250
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 615 QVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVE 469
Q +HS + RP SRP LT P ++ P V +R D QL +
Sbjct: 305 QWPKHSIEINITPRPAPSSRPPLTRPHQTVVSLPPAVEQRDEDLQLQYD 353
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 627 HEQRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAA 517
H +Q+K ++ P+H PH + PV R R A+
Sbjct: 545 HALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAAS 581
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -1
Query: 591 RPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPLLN 439
RPP RP E R V T P +R P D DVE + LN
Sbjct: 42 RPPAMRPEEEGRGVATRPGALRERKPPPNAFNAPDDDEDVEKTDQLLEPLN 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,344,269
Number of Sequences: 37544
Number of extensions: 261564
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -