Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h02
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46280| Best HMM Match : 7tm_1 (HMM E-Value=3.89981e-42)             32   0.52 
SB_45346| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_40128| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   30   1.6  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.8  
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)            28   6.4  
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)               28   6.4  
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 28   8.5  

>SB_46280| Best HMM Match : 7tm_1 (HMM E-Value=3.89981e-42)
          Length = 504

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -2

Query: 323 SNFHVLDSSVYLWAHASSRCMHTAEGGACGRVRQALCTTHGARPAATSDVTSTCSNITRS 144
           S+ H  D +     H  +  ++T        +R++ C     RP  T+    T  N+T  
Sbjct: 359 SSSHSYDGATERGKHFKATSINTGYD-TINSLRKSNCDFFPPRPCETTLFIKTLPNLTAQ 417

Query: 143 RFGPMCDKFNLLD 105
           + G  CDK +L D
Sbjct: 418 KHGSSCDKNSLCD 430


>SB_45346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 58  IVLPILITMIFF*CSLSSKLNLSHIGPNRERVMLLQVLVTSLVAAGLAPCVVQSACRTRP 237
           I++ I+I +I    S SS  + S    +   + +L ++   L+   +AP ++  A   R 
Sbjct: 127 IIIIIIIIIIIISSSSSSSSSSSSSSSSSSVINILSIITKILIIVTIAPYMIPYAVSNRV 186

Query: 238 QAPPSA 255
             PP+A
Sbjct: 187 TLPPAA 192


>SB_40128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +1

Query: 58  IVLPILITMIFF*CSLSSKLNLSHIGPNRERVMLLQVLVTSLVAAGLAPCVVQSACRTRP 237
           I+L I++  +F   ++ SK+ ++ I    + + L+           + PC    A    P
Sbjct: 59  IILSIIVFKLFRLSAIKSKIKIADIDDTPQMLFLIAKYKRGYTQIRI-PCYNNHAWAELP 117

Query: 238 QAPPSAVCMHRLDACAHR 291
             PP+   +H LD  A R
Sbjct: 118 TEPPAIASVHGLDFEAER 135


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 552 VLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPS 457
           +L PP++  + AP  ++ R  +R+LD+E + S
Sbjct: 471 LLCPPKNTTVRAPQALITRPTERELDLETISS 502


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 187  AAGLAPCVVQSACRTRPQAPPSAVCMHRLDACAH 288
            A G +PC   +ACR+ P+A  S     R   C+H
Sbjct: 3449 ATGCSPCRRHNACRSGPKAHTSYSMYGRRGGCSH 3482


>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
          Length = 218

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = -1

Query: 642 RHVAWHEQRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLR 499
           RH  WH   Q KQH         P    RPVLT P    I   T   R
Sbjct: 107 RHYYWHRYAQCKQHQYHPALLLAP---LRPVLTAPTSSGITTGTATPR 151


>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
          Length = 383

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 305 DSSVYLWAHASSRCMHTAEGGACGRVRQALCTTHG 201
           D S+ +W+  SS+C +T      G VR      HG
Sbjct: 209 DKSIRIWSRESSKCENTLTDSLGGEVRCLRFAPHG 243


>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 579 HRPHEHSRPV--LTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPLLN 439
           H P + ++PV  L   R    + P+ V   +  R  D E +PSSV LLN
Sbjct: 184 HTPRDVTQPVRLLKKTRTDDKSGPSNVTLLSQSRHEDNESVPSSVTLLN 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,177
Number of Sequences: 59808
Number of extensions: 306959
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)