Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h02
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 225 PHAPAGPALRGVHAPAGRVRPQVH 296
           P  P  P   G HAP   VR +VH
Sbjct: 271 PGPPGVPGDHGDHAPKQTVRFKVH 294


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 615 QVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPT 511
           Q++++  + P  H        VL+PP +   A PT
Sbjct: 175 QIRRNERRTPDPHDETAKKPRVLSPPLNNNDATPT 209


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 73  GSVERFDYENIFNLLRKHQIMLN 5
           G ++  DYEN+ +L + H   LN
Sbjct: 297 GPIKDIDYENVQSLYQPHLRGLN 319


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 442 E*RNRTRQVLDV*LAIDRTAQYSRRG 519
           E RN+ + VLD    +DR A Y + G
Sbjct: 444 EGRNQRKNVLDRLFRMDRDAVYLQPG 469


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 579 HRPHEHSRPVLTP 541
           H PH H  P  TP
Sbjct: 461 HTPHHHPHPPETP 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,024
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)