Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h02
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    32   0.32 
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    30   1.7  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    29   4.0  
At5g25600.1 68418.m03046 hypothetical protein low similarity to ...    28   6.9  
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ...    28   6.9  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    27   9.2  

>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 624 EQRQVKQHSNQRPPQHRPHEHSRPVLTPPRD 532
           E+ Q K  S + PP+ +P E +R V TPP++
Sbjct: 84  EKPQEKTRSVENPPREKPQEKTRSVETPPQE 114



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 600 SNQRPPQHRPHEHSRPVLTPPRD 532
           S + PP+ +P E +R V  PPR+
Sbjct: 77  SVENPPREKPQEKTRSVENPPRE 99


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 627 HEQRQVKQHSNQRPPQHRPHEHSRPVLTPPR-DIRIAAPTTVL 502
           H Q+    H +Q P  H   +   P+LT  R + R+  PTT +
Sbjct: 153 HRQQMKNSHKSQMPKGHTEEKKPTPLLTTDRVENRLKKPTTFI 195


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 225 PHAPAGPALRGV-HAPAGR-VRPQVHGGIEDVEIRLNNLHFIKN 350
           P A +G  L  +  AP G   RP    G + + IRLN LHF+ +
Sbjct: 744 PCAASGEELNQMGEAPGGNHPRPSTSRGTQRLYIRLNTLHFLSS 787


>At5g25600.1 68418.m03046 hypothetical protein low similarity to
           zinc finger protein [Arabidopsis thaliana] GI:976277
          Length = 331

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 600 SNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPLLN 439
           +N  PP    H  S  + +  R I   APT+        +  +EHLPSSVPL++
Sbjct: 219 NNPTPPPPANHSSSSDI-SSHRPIS-QAPTSASPGLDLNEPAIEHLPSSVPLVS 270


>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 442

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 588 PPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSS 454
           PP +    H    +  P   R+A PT  L +   +Q D+EH  SS
Sbjct: 179 PPLYTQVLHLMNKMNLPPPFRLALPTPPLPKAGPQQTDLEHQSSS 223


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 232 RPQAPPSAVCMHRLDACAHRYTEES 306
           RP   P+A+CMH ++ C   Y   S
Sbjct: 729 RPLKNPTAICMHIIENCYENYETPS 753


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,367
Number of Sequences: 28952
Number of extensions: 196004
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)