Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h01
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600...    29   3.8  
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390...    28   6.6  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   8.7  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    28   8.7  

>06_03_1382 -
           29758759-29758806,29758888-29758943,29759901-29760000,
           29760107-29760220,29760807-29760854,29760959-29761021,
           29761237-29761439,29761518-29761578,29761685-29761790,
           29761920-29761987,29762344-29762418,29762507-29762589,
           29762788-29762953
          Length = 396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 565 DLLYDGFVHRLQTYFLHGGFSG 500
           D+L+DG  HR++ + LH  F G
Sbjct: 323 DILFDGQTHRIKKFVLHTNFPG 344


>09_04_0723 +
           19736958-19737107,19737979-19738480,19738911-19739061,
           19739659-19739766,19739789-19739818,19739894-19740303,
           19740797-19740882,19740989-19741058,19741413-19741585,
           19741644-19741725,19742131-19742288
          Length = 639

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 390 SVPKRATPA-GRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRR 214
           S+PK  T   G+SSS       ++  EY  +   ++   + +  LG SD   S  +R++R
Sbjct: 323 SMPKEETRRNGKSSSHSEIDENSKEQEYNIKGSTQKKIKRDIKVLGSSDKNYSCTSRNKR 382

Query: 213 STSNVDLLRAS 181
           S SNV+  R S
Sbjct: 383 S-SNVNSKRKS 392


>01_07_0238 + 42209407-42209964,42210039-42210561,42212577-42212665,
            42212981-42213191,42213265-42213446,42213573-42213812,
            42214691-42214878,42215230-42215323,42215407-42215463,
            42215552-42215686,42216460-42216525,42216745-42216858,
            42217849-42218010,42218093-42218221,42218323-42218424,
            42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = -3

Query: 462  PARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARN--TLLATRRAEYKQRD*RK 289
            P+R  P  KK+      R++       +R+ P+GR+    N  +    R    +     K
Sbjct: 996  PSRSLPAGKKEFFVKGARNARSPGVKSQRSKPSGRNGDRTNFKSKSEPRPGNGQNTKGDK 1055

Query: 288  QYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLRASAT 175
                   +  G  D TQ+ G ++   +S     R +AT
Sbjct: 1056 PQGFNKRNRTGKFDKTQNRGGKASDRSSRFKKPRTAAT 1093


>01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305,
            37887397-37887471,37887543-37887734,37887922-37888173,
            37888248-37888803,37888881-37889088,37889624-37889736,
            37890029-37890060,37890545-37890619
          Length = 1368

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = -3

Query: 366  AGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNVDLLR 187
            A  SSS  +TL   ++    ++   + ++ Q+     +  T  S+G   +RS SNV++  
Sbjct: 872  ASSSSSEASTLYGRKK---NKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDT 928

Query: 186  ASATQSKQRQEYGNHEPDAS 127
             + T   Q +   + +PD S
Sbjct: 929  NNYTMENQSRN-NDGDPDKS 947


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,487
Number of Sequences: 37544
Number of extensions: 413063
Number of successful extensions: 1084
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)