Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h01
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43969| Best HMM Match : SSF (HMM E-Value=0)                         32   0.55 
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)          28   6.7  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          28   6.7  
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   28   8.9  
SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_43969| Best HMM Match : SSF (HMM E-Value=0)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -3

Query: 270 VSELGHSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGD 94
           V   GH    +SLGAR +       + RA A Q+ +RQE  NH  D+ +DK   S+  D
Sbjct: 18  VCSQGHLTVGRSLGARQQVDQRRETIARARA-QNDRRQEEANH--DSYLDKFLESRRKD 73


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = -3

Query: 282 NVQAVSELGHSDTTQSLGA------RSRRSTSN-VDLLRASATQSKQRQEYGNHEPDASV 124
           N Q   ELG  D    L        R +++T N  DLL+ + T+S+  +E    EPDA  
Sbjct: 13  NDQNPGELGDDDEETDLNLIPSKPRRKKKATINPFDLLKENGTESEDDEESSTKEPDAVH 72

Query: 123 D 121
           D
Sbjct: 73  D 73


>SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 390 SVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGH--SDTTQSLGARSR 217
           S+ KR+   GRS S    LLA  +A++   D ++ Y+   +    H   + + +LG + R
Sbjct: 162 SLTKRSDTWGRSLSLGMFLLAKSQAKHVLYDTKRVYSALPIRSYFHYFPECSSALGMQDR 221

Query: 216 RSTSNVDLLRASATQSKQRQEYG 148
           R T ++ L+ +S      + + G
Sbjct: 222 RIT-DLQLMISSQYDKNAKAKSG 243


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 390 SVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGH--SDTTQSLGARSR 217
           S+ KR+   GRS S    LLA  +A++   D ++ Y+   +    H   + + +LG + R
Sbjct: 162 SLTKRSDTWGRSLSLGMFLLAKSQAKHVLYDTKRVYSALPIRSYFHYFPECSSALGMQDR 221

Query: 216 RSTSNVDLLRASATQSKQRQEYG 148
           R T ++ L+ +S      + + G
Sbjct: 222 RIT-DLQLMISSQYDKNAKAKSG 243


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 603 SPVSAARGTSTLP-ATRTALSAIRS 674
           S VSA RGTST+P A+ + LS IRS
Sbjct: 920 SAVSARRGTSTVPEASASWLSCIRS 944


>SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 603 SPVSAARGTSTLP-ATRTALSAIRS 674
           S VSA RGTST+P A+ + LS IRS
Sbjct: 431 SAVSARRGTSTVPEASASWLSCIRS 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,290,785
Number of Sequences: 59808
Number of extensions: 467180
Number of successful extensions: 1887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)