Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h01
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    30   1.4  
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    30   1.8  
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-...    29   3.2  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    29   3.2  
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    29   3.2  
At4g00760.1 68417.m00106 two-component responsive regulator fami...    29   4.2  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    28   7.3  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    27   9.6  

>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +1

Query: 487 VSRVTLRIRRARNKFVGD--GQSHHT-RDHSTSGDVTAGLLG--VLSRLHEAR 630
           VS   + +  +R +F+GD  G+   T RD +T   VTAG+LG   + R+H  R
Sbjct: 482 VSHAPILVGPSRKRFLGDICGRPEATDRDAATVASVTAGILGGANIIRVHNVR 534


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 378 RATPAGRSS-SARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTS 205
           R T  G SS S+ ++  AT+R  +      K    +++++  HSD+ Q    ++RRS+S
Sbjct: 454 RTTVGGCSSGSSLSSANATKRNNHHSSSTPKMSETRSLAQPSHSDSPQISAVKNRRSSS 512


>At3g42790.1 68416.m04474 PHD finger family protein contains
           PHD-finger domain, INTERPRO:IPR001965
          Length = 250

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 249 DTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGA 79
           D + +      +S SN  +  +    SK +Q     E D  +D+     HG+ +CGA
Sbjct: 146 DKSSAANQNGNKSKSNSKVRTSEGKSSKTKQP---KEEDEEIDEDDEDDHGETLCGA 199


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
            protein 
          Length = 987

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
 Frame = -3

Query: 411  RSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSL 232
            RS  R      R++   +    RNT    RR+  K  + ++ YN +  S      + +  
Sbjct: 760  RSRSRSLETKNRSSRKNKLDEDRNTGSRRRRSRSKSVEGKRSYNKETRSR--DKKSKRRS 817

Query: 231  GARSRRSTS----NVDLLRASATQSKQRQEYGNHEPDASVDKTHYSK 103
            G RSR  +S      D+  +     +++  +  H    S++K + S+
Sbjct: 818  GRRSRSPSSEGKQGRDIRSSPGYSDEKKSRHKRHSRSRSIEKKNSSR 864


>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 1009

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 183 LHEEGLHCLSISCSVHQVIGWYQNGQVHSQLVHYTVYV 296
           LH+EG HCL + C   +V+G Y   Q       Y++ V
Sbjct: 518 LHKEGQHCLKLKC---RVLGAYFEKQGSKSFAVYSIAV 552


>At4g00760.1 68417.m00106 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 367

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
 Frame = -3

Query: 309 KQRD*RKQYNVQAVSELGHSDT-TQSLGARSRRSTSN-------VDLLRASATQSKQRQE 154
           +QR+ R Q ++    E  HS T TQSLGA  +++ +N       +D  +    Q  +R+E
Sbjct: 131 RQRNFRSQIDINP-PEKNHSITHTQSLGAELKKNNNNSEVETEDLDKYKDELGQGNKRKE 189

Query: 153 YGNHEPDASVDKTHYSKHGDR 91
             + +     +K + S  GD+
Sbjct: 190 RADTDTGEHTEKNNGSDLGDQ 210


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 456 RRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSA 346
           R S    + L A  K +    FS+P+R TP  +SSS+
Sbjct: 80  RSSSAQPRLLFAIEKHNQWSLFSLPQRLTPYEKSSSS 116


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 429 LLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RK 289
           +L   K   +++   PK+++PA  SSS++ +  + ++ E   R  +K
Sbjct: 474 VLVNEKEKGVKRKRTPKKSSPAAGSSSSKRSAKSQKKTEEATRTNKK 520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,053
Number of Sequences: 28952
Number of extensions: 316241
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)