Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g24
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 81 6e-16
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 39 0.003
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11) 31 1.1
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9) 29 3.5
SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05) 29 4.6
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 4.6
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 28 6.1
SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5) 28 8.1
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1) 28 8.1
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07) 28 8.1
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 81.4 bits (192), Expect = 6e-16
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +3
Query: 165 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNE 344
P++IPGY G+CP++KY+IG+T+G TT +L D SV +S + VLSD + Q+ A
Sbjct: 47 PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSD---IEPQVPPKADTR 103
Query: 345 ID-IVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSN 509
D I N GD M+PGY +G++P +G S + + SA+ DF N
Sbjct: 104 RDTIKNRAISLGDQKLTDQMVPGY---TGYIPKAEHYYGNSYAETSRSAIADFHQN 156
Score = 68.9 bits (161), Expect = 4e-12
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Frame = +3
Query: 174 IPGYTGHCPEYKYRIGDTYGSTTHKILLD---PSVQHSER-------------------L 287
+PGYTG+ P+ ++ G++Y T+ + D ++H ++ L
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIADFHQNQLKHRQKAINLRTITEIQRGKQVLPEL 183
Query: 288 VLSD-RTADDFQIYRPAQNEIDIVNARFRNGDPVYK---------HPMIPGYEGFSGHVP 437
+ SD RT FQ+ P + D + P + +P G+SG VP
Sbjct: 184 ITSDTRTLSKFQV--PLKAIADKPKMYYSKKAPQHSLSPLALSNDNPKKHHKSGYSGFVP 241
Query: 438 YGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSINPTEIYHKH-VGM 614
GE LTN AL FSSN + + PV + +P+ L ++ IY K+ G+
Sbjct: 242 RYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPVTIERPEVRL-VDTRPIYPKNNTGL 300
Query: 615 LPNYAGHVPGCVFRFGKTYGNDT 683
+P++ GHVPG FR+G T+G T
Sbjct: 301 VPHFTGHVPGEKFRYGMTFGYST 323
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +3
Query: 168 HYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNEI 347
H+ GY+G P Y+ +G+ Y T+K L+ S + D I RP E+
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPV---TIERP---EV 284
Query: 348 DIVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFG 458
+V+ R P+Y F+GHVP R+G
Sbjct: 285 RLVDTR-----PIYPKNNTGLVPHFTGHVPGEKFRYG 316
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +3
Query: 180 GYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTAD--DFQIYRPAQNEIDI 353
GY G+CP+ KY G TYG T K L +E+L+ + R D + + + P N ++
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDK--LTTRHMRNEKLI-TTRLPDPKEREQFLPQPNGVNK 690
Query: 354 VNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDF 500
+ A + G++G++P +G ++ T+ A+ DF
Sbjct: 691 LTANMK--------------LGYTGYIPTMRYLYGSRYREATDQAISDF 725
>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = +3
Query: 171 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDP-SVQHSERLVLSDRTADDFQIYRPAQNEI 347
++PGY G P+ ++R GDT+G+ T K D + Q + T D +I P
Sbjct: 19 HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKRSTAQAPGTEWDAKIAFPTVYSN 78
Query: 348 D---IVNARFRNGDPVYKHPMIPGYEGFSGH 431
D +V AR R D P Y+ F+ H
Sbjct: 79 DPKLVVGARTRERDRWLSRPQ---YQLFNRH 106
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 615 LPNYAGHVPGCVFRFGKTYGNDT 683
LP YAG P +R+G T+GNDT
Sbjct: 20 LPGYAGFRPQQQWRYGDTFGNDT 42
>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
Length = 591
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 462 SSKKLTNSALCDFSSNYRRRQSTEWAPVNVV-KPDPPLSINPTEIYHKHVGMLPNY 626
SS+ +++CD R ++ W +NVV DP INP + + + P Y
Sbjct: 267 SSRDREENSICDLQEEIDERTASLWTWLNVVTMDDPDCFINPRYQKNASLKLFPRY 322
>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
Length = 646
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 465 TTRRNVESRTAHDPKTLRILVSW 397
T R+ + S TAHDP++L +W
Sbjct: 109 TERKRLRSATAHDPRSLSCFTTW 131
>SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05)
Length = 284
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 459 ESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSI 578
ES K+ N S RR + EW VNV P P SI
Sbjct: 74 ESDKETHNPGFARSLSTRERRVTLEWKSVNVFVPIPKPSI 113
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/74 (24%), Positives = 24/74 (32%)
Frame = +3
Query: 375 GDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVV 554
G P Y HPM GY YG Q K ++ Y P++
Sbjct: 613 GQPSYSHPMPQGYAPQGYQPEYGGQSMQPPPPKTEGVPSQEYPPGYGVEGQESQPPLSEY 672
Query: 555 KPDPPLSINPTEIY 596
+ P + P IY
Sbjct: 673 QQQPTIFEQPLGIY 686
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 161 PTALYSWVHGSLSRVQVS 214
P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120
>SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5)
Length = 353
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 462 SSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKP 560
S + LTNS DF++N+RR++ T++ ++ KP
Sbjct: 160 SMQNLTNSK-SDFNNNFRRKKITDFYGFHLSKP 191
>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
Length = 212
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 393 ACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIAPASLNAARSDR 256
+C D+H+ R C+S+ ++DG S R P RS R
Sbjct: 148 SCPMDKHHVETREACVSKGLIDGCVSSAFGSGREEPVQGAFCRSSR 193
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 324 RSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRSDTCT 202
R+ S R +L++ R +C LSSHT R TCT
Sbjct: 1016 RTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHTLSRHVTCT 1056
>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
Length = 465
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 431 MTRKPFVSWYHGMLVNGIAITETCVHDVYLVLCWTVDLEV 312
+ ++PF+ YH +LVN + + C + V L++ T++ ++
Sbjct: 210 LNKRPFI--YHQLLVNEVHASVHCFNRVILIISGTINRDL 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,191,746
Number of Sequences: 59808
Number of extensions: 524345
Number of successful extensions: 1502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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