Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g24
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    31   0.71 
At5g61350.1 68418.m07698 protein kinase family protein contains ...    30   1.2  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    29   2.9  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   2.9  
At3g10770.1 68416.m01296 expressed protein                             29   3.8  
At3g10770.2 68416.m01297 expressed protein                             28   5.0  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   6.6  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    28   6.6  
At5g01970.1 68418.m00116 expressed protein                             27   8.8  
At4g23882.1 68417.m03434 heavy-metal-associated domain-containin...    27   8.8  

>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 171 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSDRTADDFQIYRPAQNEID 350
           Y  G  G  P YKY +G +   T+HKI + P+   ++R++   +  D+ Q    + + ID
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKIRV-PA--WTDRILFKIQDTDNIQATLHSYDSID 313

Query: 351 IV 356
            V
Sbjct: 314 QV 315


>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 341 RDRHRERTFP*WRSRLQASHDTRIRRVFGSCAVRLSTFRRVVEKAH*FSS 490
           +D  ++ +F  W   L ASH + I    GS + R+S F     K++ FSS
Sbjct: 453 KDWQKQNSFSSWLLPLHASHSSYISSKGGSTSRRMSIFGSKKSKSNGFSS 502


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 447 QRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNV 551
           ++FGESS  +  +AL    ++YR  +  +W PV +
Sbjct: 320 RKFGESSLGMLRTALLTAYNDYRLSKDCKWLPVEL 354


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 415  KGFRVMCRTAFNVSASR--RKSSLIQLSATFRRITEEGRA 528
            KG ++  R A+N+  S   RK SL +    FR++TEEG A
Sbjct: 1038 KGVKLDAR-AYNIMISELCRKDSLSKADILFRKMTEEGHA 1076


>At3g10770.1 68416.m01296 expressed protein
          Length = 333

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/100 (28%), Positives = 46/100 (46%)
 Frame = +3

Query: 297 DRTADDFQIYRPAQNEIDIVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKL 476
           DR+ D + +  PA   + ++ +  ++  P+  H  IP ++GF  H+P G Q        L
Sbjct: 233 DRSYDRY-VVDPAYRYVRVMPSG-QSFSPMPIH--IPFHDGFFPHMPRGHQANLNYGHPL 288

Query: 477 TNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSINPTEIY 596
            N AL  F+ N      T W    V+    PL+ + T +Y
Sbjct: 289 -NPALSPFTHNV--ASYTPWPNSPVMNYAQPLNGSDTNLY 325


>At3g10770.2 68416.m01297 expressed protein
          Length = 325

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 402 IPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSIN 581
           IP ++GF  H+P G Q        L N AL  F+ N      T W    V+    PL+ +
Sbjct: 256 IPFHDGFFPHMPRGHQANLNYGHPL-NPALSPFTHNV--ASYTPWPNSPVMNYAQPLNGS 312

Query: 582 PTEIY 596
            T +Y
Sbjct: 313 DTNLY 317


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 208 SIGSAIRMARQHTRSFSIRACSIQRGW 288
           SIGSA R  RQ T++ S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
           similar to DNA replication licensing factor MCM2 from
           {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 288 VLSDRTADDFQIYRPAQNEIDIVNARFRNGDPVYKHPMIPG 410
           +L D  +DD+  YRP++     V  R   GDP    P  PG
Sbjct: 130 LLHDNDSDDWN-YRPSKRSRTTVPPRGNGGDPDGNPPSSPG 169


>At5g01970.1 68418.m00116 expressed protein
          Length = 351

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 403 YQDTKGFRVMCRTAFNVSASRRKSSLIQLSATFRRITEEGRAL 531
           Y   +GF+ M          +  SSL Q+  TF +  E+GR L
Sbjct: 89  YLSDEGFKKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTL 131


>At4g23882.1 68417.m03434 heavy-metal-associated domain-containing
           protein
          Length = 284

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 571 NGGSGLTTFTGAHSVLCLLR*FDEKSQRAELVSFFDDS 458
           N   GL T TG  +   LL    +  ++AELVSF  D+
Sbjct: 112 NAEQGLLTVTGDANPTTLLHKLTKWGKKAELVSFLGDN 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,218
Number of Sequences: 28952
Number of extensions: 368491
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)