Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g22
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +1

Query: 199 PLAFLCCQGVGMPLSE--ATSSDIKDGAIKQLKYDVAGMENHRTKQHGHPALIDPGRSSG 372
           PL   C +    P  +    ++ + +G+   L  ++ G    +T  HG P    P  SSG
Sbjct: 28  PLKISCLKTTPPPEEDNRGCAASVGEGSF-YLPMNMQGFVKQQTAPHGPPYAPHPSLSSG 86


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 304 GMENHRTKQHGHPALIDPG 360
           G+  H      HPA++ PG
Sbjct: 235 GLSPHPPHLSSHPAIVTPG 253


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 304 GMENHRTKQHGHPALIDPG 360
           G+  H      HPA++ PG
Sbjct: 127 GLSPHPPHLSSHPAIVTPG 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,700
Number of Sequences: 336
Number of extensions: 3726
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)