Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g22
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)                   32   0.55 
SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)        28   8.9  

>SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +1

Query: 358 GRSSGEPLNEGHYTIDFAPAPGDNE-ETAMRCQDFWEMIINEKQLEGFMA-NPVNI 519
           GR + + ++EG Y + F  +PGD   E ++R +D  E++++ K+  G  A + VNI
Sbjct: 447 GRKARDSMSEGGYQVQFVVSPGDGMFEASVRLKD-GELVVDIKRWLGAYAWHQVNI 501


>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
          Length = 114

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 577 FEINEANNFPAINAIKTLNKKGLAASIFGTGKKKINFLNVFN 702
           F+I E  +   +  +K   +KGL +  +G G+ K++F++V N
Sbjct: 41  FDIREPRHSKGLTFVKNYIEKGLFSFTYGRGESKVDFVHVDN 82


>SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)
          Length = 263

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 427 YLQVLGQSRWCSDLH*EAHRKIVQDRLVLDDHVVSFCDFPYP 302
           YL ++G S W S  +    R   +D+ VL + + +  DFPYP
Sbjct: 179 YLPIMGFS-WLSSEYAFVSRNWQKDQRVLQNSLDTLQDFPYP 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,479,471
Number of Sequences: 59808
Number of extensions: 472680
Number of successful extensions: 1004
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)