Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g22
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   3.4  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   3.4  
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 678 FLFSSPKNGCSESFLVECFNGIDCREIVCFIDFKC 574
           F+ ++ +  C E   V+C  G +CR  VC   + C
Sbjct: 575 FVMTAFEGKCDECLHVQCRYGEECRSGVCVCSYNC 609


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 678 FLFSSPKNGCSESFLVECFNGIDCREIVCFIDFKC 574
           F+ ++ +  C E   V+C  G +CR  VC   + C
Sbjct: 583 FVMTAFEGKCDECLHVQCRYGEECRSGVCVCSYNC 617


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 483 LFVYDHLPKVLTPHGCLLIISRCWGKVDGVVTFIERLTGRSSRID 349
           LF ++ L +   PHG ++ +  C G +  + TFI     R +R++
Sbjct: 117 LFCHNFLERYFLPHGIVVSVIYCLGLM-SLWTFIAGFLSRKNRVE 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,946
Number of Sequences: 27780
Number of extensions: 363812
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)