Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g22
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.24 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 292  YDVAGMENHRTKQHGHPALIDPGRSSGEPLNEGHYTIDFAPAPGDNEETAMRCQDFWEMI 471
            +D+  +     ++   P + D   S   P NEG + +        N ETA   ++ WE+I
Sbjct: 1045 HDILNLRPLSMEKGTRPMIPDDNTSLALPKNEGPFRL--------NVETAKTNEEMWELI 1096

Query: 472  INEK 483
              EK
Sbjct: 1097 DTEK 1100


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  PSAY*ATVCLRMLHDHCKLLQ 125
           P  + + +C+R + +H K+L+
Sbjct: 482 PEIHKSCICVRFIAEHTKMLE 502


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  PSAY*ATVCLRMLHDHCKLLQ 125
           P  + + +C+R + +H K+L+
Sbjct: 482 PEIHKSCICVRFIAEHTKMLE 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,536
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)