Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g22
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22270.1 68415.m02644 expressed protein                             29   3.2  
At4g17940.1 68417.m02672 expressed protein                             28   7.3  
At5g58340.1 68418.m07305 expressed protein ; expression supporte...    27   9.6  

>At2g22270.1 68415.m02644 expressed protein
          Length = 328

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 450 SRLLGDDHKRKATRRIHGKPGEYNGVASRG 539
           +RL  ++H  K++++IH +  ++ G+ S G
Sbjct: 242 NRLFSEEHVVKSSKKIHNQKSQFQGLTSNG 271


>At4g17940.1 68417.m02672 expressed protein
          Length = 274

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 385 EGHYTIDFAPAPGDNEETAMRCQDFWEMIINEKQLEGFMANPVN 516
           E +Y       PGD E  +M  +  WE   +EK+ +G+    VN
Sbjct: 186 EEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVN 229


>At5g58340.1 68418.m07305 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 349 IDPGRSSGEPLNEG-HYTIDFAPAPGDNEETAMRCQDFWEMI--INEK 483
           IDP    GE  N    +++D  P P     T   CQD  E    +NEK
Sbjct: 309 IDPSTRQGEEPNSAIDHSVDVTPPPTRVNRTGTGCQDHNEASDNVNEK 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,206
Number of Sequences: 28952
Number of extensions: 331650
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)