Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g18
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.028
SB_51799| Best HMM Match : SET (HMM E-Value=0)                         33   0.26 
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   2.4  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   7.3  
SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)            27   9.7  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   27   9.7  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = +3

Query: 294 SNGGTCSTNKTDEDGCEVRDIYAIRSHGYCSA-CAKCCKQISRSQFQGVTP*HSFHQRIC 470
           S  G C  +  D +GC   ++Y       C+  C   C    +S++ GVT   S     C
Sbjct: 230 SASGKCDQS-CDGEGC---NLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGSGCDVKC 285

Query: 471 YDSGWKIIQSVRQRKERGCSNISDSGITRNWCRTHRCQST*LEPFHCIRECG 626
            ++G +      Q+    C    D+ +  + C   RCQ+       C +ECG
Sbjct: 286 PNNGTESCDQTCQKSAGDCKMRCDAKVCTSKCTDGRCQAISCGGDRCTQECG 337


>SB_51799| Best HMM Match : SET (HMM E-Value=0)
          Length = 503

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +1

Query: 238 MVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAIVAHVRNAANKSQ 417
           +++S SD++ETE T+D DT  EG ++    T  D +   S R + + +        N+++
Sbjct: 85  LLLSESDESETETTMD-DTRQEGEIEIFAATVTDEEKCTSSRSSDSIVCLEETAIPNENK 143

Query: 418 E 420
           +
Sbjct: 144 Q 144


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 211 AATITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVISMRYAHTAI 381
           A++ + P+    S SD ++ +++    +  +G  QP+  T+ DVK VI+M  A  A+
Sbjct: 798 ASSTSQPQKNQKSYSDPSQAQSS---PSPAQGTAQPVVKTEEDVKPVITMAPASQAV 851


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 546 GITRNWCRTHR--CQST*LEPFHCIRECGGFH 635
           G+ RNWCR ++  C+S  L+P  C  +   +H
Sbjct: 500 GLRRNWCREYQGLCESYNLQPVTCDSDYTTYH 531


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 111  INRSIENKQNSNNVAKAAALNFIREHWSPVCGTCCHNYDPRDHG 242
            IN+S++ ++NSN++    A N    +W           D  D+G
Sbjct: 1324 INKSLDREKNSNHILTIRATNIAPPYWYGEASVGVQVLDVNDNG 1367


>SB_9807| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.00031)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 118 VPLKISKTVTMSLKRQXXXXXXXXXXXXVVHAATITTPETMVVSRSD-DAETEATLDVDT 294
           V + +S TVT+++               V    T T  +T  V+ +D D +T A  D DT
Sbjct: 111 VTVTVSDTVTVTVTVTVTDTVTDTVTVTVTDTDTDTDTDTDTVTDTDTDTDTVAVADTDT 170

Query: 295 VT 300
           VT
Sbjct: 171 VT 172


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 351 DIYAIRSHGYCSACAKCCKQISRSQFQGVT 440
           DI A RS GY S  A    Q+SRS   G+T
Sbjct: 111 DIPATRSPGYLSLSAFGSPQVSRSTTPGIT 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,763,302
Number of Sequences: 59808
Number of extensions: 404948
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)