Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g18
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-rela...    29   3.4  
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...    28   4.5  
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...    28   6.0  
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...    28   6.0  

>At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-related
           / KCC1 protein-related contains weak hit to Pfam profile
           PF03522: K-Cl Co-transporter type 1 (KCC1)
          Length = 219

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 208 HAATITTPETMVVSRSDDAETEATLDVDTVTEGPVQPIKLTKMDVKSVIS 357
           +A  +   E  +V   +D E    LDV   +E   QP+K  K+D    +S
Sbjct: 11  NAGYLVNGEVKIVVEINDLEVIGKLDVSEESEETNQPLKKIKLDDNDAVS 60


>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 150 VAKAAALNFIREHWSPVCGTCC 215
           + KA   ++++ HW P CG  C
Sbjct: 213 INKAGKAHYVKFHWKPTCGIKC 234


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 VAKAAALNFIREHWSPVCG 206
           +AK+  + F++ HW P CG
Sbjct: 213 IAKSGKVLFVKFHWKPTCG 231


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 VAKAAALNFIREHWSPVCG 206
           +AK+  + F++ HW P CG
Sbjct: 213 IAKSGKVLFVKFHWKPTCG 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,335
Number of Sequences: 28952
Number of extensions: 267925
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)