Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g17
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 29 0.78
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 28 1.0
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 1.8
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 27 2.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 4.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 4.2
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 26 4.2
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.5
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.5
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.6
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 609 KILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEA 499
K LP + PW L F+ P Y++ P + +EA
Sbjct: 353 KFLPPHKLPWIPSLDVSSFSLPPIDYYLNGPYDNVEA 389
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 433 NSGFLDVIFEFTPLVVFYIFIHCF--NCFFRIRNVHKRWHFIK 555
NS ++ FT L +FY+ ++C N + +RN W ++
Sbjct: 318 NSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIMQ 360
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 600 PEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIEND 475
P++HQ W DL ++ K + S ++T + EN+EN+
Sbjct: 284 PDWHQ-WPDDLRDVSSPKESDGLNDSWSRQTNQVETENVENE 324
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -1
Query: 579 NSDLSELDFNKMPSFMYISNPKETIEAMNENIENDKWSE---FENYIKESRININVRQVL 409
+S+ EL+ K +Y+ N + IEA+ E + + SE + +K++ +N V+
Sbjct: 320 DSEEPELNEIKSRKRLYVQNCQNGIEAVIEKLSQSQQSENPFIAHELKQTSVNEITAHVI 379
Query: 408 NE 403
NE
Sbjct: 380 NE 381
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 537 FMYISNPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADEF 376
FM + +P +I + E ++ S Y ES NIN+R + NE+ + +E+
Sbjct: 19 FMILFDPSSSISLLKEKVQETYKSL---YPFES--NINIRNIKNEESYDIPNEY 67
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 304 MCFARPFLLPRFLCYDFL-IAFFCEVVDAVM 215
+CF P L F+CY F + F V DA++
Sbjct: 203 ICFGAPLFLVIFICYIFFTVLSFFNVPDAIV 233
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.2 bits (55), Expect = 4.2
Identities = 24/118 (20%), Positives = 53/118 (44%)
Frame = -1
Query: 573 DLSELDFNKMPSFMYISNPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEKQI 394
+ +E +M S +Y S+ + + N + D + + ++++ V L +
Sbjct: 395 NFNEGSIAEMKSSIYESSQEGIRSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPS 454
Query: 393 SLADEFFS*NKTVFYSVVHSYSKNIILKSLCVLQGHSCFRGSFVMIFSLRFSVKLSML 220
++ E + FY + S+N ++K+LC + S SF++ + +R + LS L
Sbjct: 455 MVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTS----SFLVPYYVRLARILSQL 508
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 140 SYRTKDEYDCYVEGYVKCFWSLCDRHNSIDNF 235
S R K DCY++ Y + L + N+ D F
Sbjct: 874 SLRRKFNIDCYLKRYERALGHLKEMENAFDEF 905
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 651 VMSKEARLCYHAVPKILPEYHQPWNSDLSELDFNKMPSFMYISN 520
V K R+ + VP+I PE Q + D ++ D +YISN
Sbjct: 273 VFLKFQRIQNYIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISN 316
>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 167 CYVEGYVKCFWSLCDRHNSIDN 232
C+++GYV+ FW + H N
Sbjct: 32 CFIKGYVRRFWMRSEDHRGTVN 53
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 438 WIP*CNFRIHSTCRFLYFHSLL 503
WI C++R+ C +YF +LL
Sbjct: 31 WIDACHYRVLPACLNIYFSNLL 52
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 322 YYFKVPMCFARPFLLPR-FLCYDFLIAFFC-EVVDAVMSVTETPKTFNVAFHITIVFVFS 149
YY + +C RPFL + D C + ++ +++V +T N + T+ V++
Sbjct: 485 YYHLIRICLNRPFLSRKEVTANDLTPKTICTDSINEIVTVIRAHRTANGLRYSTLYIVYA 544
Query: 148 SI 143
+I
Sbjct: 545 AI 546
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 218 NSIDNFTEKRNEKIIT--KEPRKQEW 289
+ ID FT+K+ +K I KE R+++W
Sbjct: 99 SKIDEFTDKKEKKKIAKRKEKRERDW 124
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 298 FARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFV 155
F PF P FLCYD L+ E + S T T F+ + ++FV
Sbjct: 575 FNVPF--PVFLCYDILV----ETILPAGSQTLTDSVFSSKLYKLVIFV 616
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 579 NSDLSELDFNKMPSFMYISNPKETIEAMNENIENDKWS 466
+S + L N++ MY SNP+E ++ N+ W+
Sbjct: 2219 SSKVLHLPSNELIPMMYFSNPQEIALLLSLPSSNNHWT 2256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,746
Number of Sequences: 5004
Number of extensions: 54038
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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