Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g17
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    33   0.15 
05_05_0290 - 23879064-23880035                                         33   0.26 
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372...    32   0.46 
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    29   2.5  
07_01_1079 + 9770444-9772756                                           29   4.3  
02_03_0204 - 16369800-16371758,16372260-16372331                       29   4.3  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   5.7  
06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117           27   9.9  

>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 29/82 (35%), Positives = 39/82 (47%)
 Frame = -1

Query: 657 IVVMSKEARLCYHAVPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIEN 478
           IV+M+ EAR C+H VP+I         SD +E                  I A+   +  
Sbjct: 282 IVLMAGEARECFHGVPRIFT------GSDQAE------------------ISALVPQLSA 317

Query: 477 DKWSEFENYIKESRININVRQV 412
           +  S   NYI+ SRININ+RQV
Sbjct: 318 EDDSFILNYIQNSRININIRQV 339


>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -1

Query: 528 ISNPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEKQISLADE 379
           I +P ET+++ +E  +ND   EFE +I+  R    +R+VL+     LAD+
Sbjct: 62  IEHPGETMDSDDE--DNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADD 109


>08_01_0420 +
           3726392-3727116,3727450-3727648,3727787-3727879,
           3728001-3728129,3728445-3728498,3728597-3728674,
           3728773-3728835,3729101-3729213,3729392-3729500
          Length = 520

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 561 LDFNKMPSFMYISNPKETIEAM--NENIENDKWSEFENYIKESRININVRQVLNEKQ 397
           LD    PS   +  P ET+ +   ++N+ ND W  FE +  +  +N  +   LNE++
Sbjct: 408 LDQQAFPSLNGL--PGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERE 462


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 322 YYFKVPMCF-ARPFLLPRFLCYDFLIAFFCEVVDAVMSVTE 203
           YYF  P+ + A    LP + CY FL    C+V    +S+TE
Sbjct: 362 YYFLNPLPYQAIRLFLPSWHCYYFLNPLPCQVCTTELSLTE 402


>07_01_1079 + 9770444-9772756
          Length = 770

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 615 VPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIENDKWSEFENYIKESR 436
           VP +L    +PW   LS    N +     +S+PK      N  ++ D   +F + + ESR
Sbjct: 151 VPGVLKCLEKPWA--LSSASINSL-----VSSPKNVRRTTNREVKKDPIQDFIDKVNESR 203

Query: 435 I 433
           +
Sbjct: 204 L 204


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 220 VMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 104
           ++S T  P   N+++H+ +  ++ S+ PK  N R K ++
Sbjct: 92  MISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIV 130


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 212 RHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFK 316
           R N I  F E +  K + +EPR   W C    DF+
Sbjct: 242 RRNVIREFKELKELKRMRREPRCTSWFCVADTDFQ 276


>06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117
          Length = 457

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 582 WNSDLSELDFNKM--PSFMYISNPKETIEAMNENIENDKWSEFENYI 448
           WN+ L   D+N      F   S PK+ +      IE + WS  E YI
Sbjct: 244 WNARLFSQDWNHAIHNGFKDSSIPKQCLHRYKIYIEGEAWSVSEKYI 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,556
Number of Sequences: 37544
Number of extensions: 273294
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)