Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g17
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)                29   3.3  
SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)                   29   3.3  
SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)                    29   3.3  

>SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -1

Query: 657 IVVMSKEARLCYHAVPKIL 601
           I++MS EARL +HAVP+I+
Sbjct: 249 ILIMSGEARLAFHAVPRII 267



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 522 NPKETIEAMNENIENDKWSEFENYIKESRININVRQVLNEK 400
           NPK  +   +  +  ++W  F  Y+  +RIN+N + ++  K
Sbjct: 325 NPKAFL-TQSPPMTEEEWLPFAKYLSRTRINVNGKHLIPRK 364


>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
          Length = 320

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 140 SYRTKDEYDCYVEGYVKCFWSLCDRHNSIDNFTEKRNEKIITKEPRKQEWPCKTHR 307
           S + K+E    +EG +    SL    N +    E++ +KI+  E R ++  C+T R
Sbjct: 171 SLKFKEEKISDLEGQIDELESLAAEKNRLSQSLEQKMKKIMELENRVEDLTCETQR 226


>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
          Length = 583

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +2

Query: 53  LCNFKILFLIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVEGYVKCFWSLCDRHNSIDN 232
           +C  +I F  +F  S   +     +R+L     K E D    GY K   SL   HN   +
Sbjct: 109 ICGTEIPFSELFASSLEGYECTSSLRKLNISHAKGEIDYAALGYFKNLTSLDVSHNMFSD 168

Query: 233 FTEKR 247
           F  K+
Sbjct: 169 FDLKQ 173


>SB_4125| Best HMM Match : HLH (HMM E-Value=5.7e-05)
          Length = 218

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/74 (20%), Positives = 35/74 (47%)
 Frame = +2

Query: 44  ISTLCNFKILFLIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVEGYVKCFWSLCDRHNS 223
           +  LCNF+ L + +  K++        ++  G  R++ + +  + GY  C   +  R   
Sbjct: 85  VPKLCNFQELQVALMEKAEILETAVQFLKEHGLGRSQTQTNHRLAGYSACAKEVYCRLRM 144

Query: 224 IDNFTEKRNEKIIT 265
           +DN  +   E++++
Sbjct: 145 LDNIDDSLRERMVS 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,012
Number of Sequences: 59808
Number of extensions: 357148
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)