Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g17
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase fa...    34   0.096
At3g27540.1 68416.m03442 glycosyl transferase family 17 protein ...    30   1.2  
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    29   2.1  
At1g66930.1 68414.m07606 serine/threonine protein kinase family ...    29   2.7  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   3.6  
At1g03445.1 68414.m00325 kelch repeat-containing protein / serin...    28   4.8  
At1g09320.1 68414.m01043 agenet domain-containing protein contai...    27   8.3  

>At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB proteins from Homo
           sapiens [SP|Q13686], Caulobacter crescentus
           [GI:2055386]; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 345

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = -1

Query: 657 IVVMSKEARLCYHAVPKILPEYHQPWNSDLSELDFNKMPSFMYISNPKETIEAMNENIEN 478
           +V+M+ EAR C+H +P+I                        +       I A+   + +
Sbjct: 287 VVLMAGEARECFHGIPRI------------------------FTGEENADIGALESELSH 322

Query: 477 DKWSEFENYIKESRININVRQV 412
           +    F  YIK SRININ+RQV
Sbjct: 323 ESGHFFAEYIKTSRININIRQV 344


>At3g27540.1 68416.m03442 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 354 FYSVVHSYSKNIILKSLCVLQGHSCFRGSFVMIF-SLRFSVKLSMLLCRSQRLQKHLT 184
           F ++ H Y++N+ ++SLC L G    R S   +F ++ FS +  +L  R   L  ++T
Sbjct: 80  FQTIPHYYNENVTMESLCSLHGWG-IRDSPRRVFDAVLFSNEKDLLTVRWNELYPYVT 136


>At4g32620.1 68417.m04644 expressed protein predicted protein
           T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 185 VKCFWSLCDR--HNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKII 322
           +K FW L +R  H  +D F   +N   +  + R +EW       FKI+
Sbjct: 365 IKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 412


>At1g66930.1 68414.m07606 serine/threonine protein kinase family
           protein contains Pfam PF00069: Protein kinase domain
          Length = 674

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 259 DFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 104
           DF +A  CE  ++VMS+ +T  T        I  V+ S+  KS  Y + +++
Sbjct: 488 DFGLAKLCEKKESVMSLMDTRGTIGYIAPEMISRVYGSVSHKSDVYSYGMLV 539


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 95  SQCNHYFKPIVRRLGSYRTKDEYDC-YVEGYVKCFWSLCDRHN-SID 229
           S+CNH  K    R G +   D+Y C Y +  V   ++ C   N SID
Sbjct: 58  SRCNHSLKIFQGRFGQFGEDDDYQCHYCQQNVGFHFARCTICNISID 104


>At1g03445.1 68414.m00325 kelch repeat-containing protein /
           serine/threonine phosphoesterase family protein contains
           Pfam profiles: PF00149 calcineurin-like phosphoesterase,
           PF01344: kelch motif
          Length = 795

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 212 RHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKIIFLE 331
           R  S+D  T+  ++K+I+   R + W    +RDF + +LE
Sbjct: 491 RTASLDQSTQDLHKKVISTLLRPKTWTPPANRDFFLSYLE 530


>At1g09320.1 68414.m01043 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 517

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 530 YIKDGILLKSSSERSEFHG*WYSGNIL 610
           Y+K G  ++ SS+   F G WY G ++
Sbjct: 38  YLKPGSAVEISSDEIGFRGSWYMGKVI 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,148
Number of Sequences: 28952
Number of extensions: 254531
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)