Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g15
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_20409| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.063
SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)                 33   0.19 
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       33   0.19 
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)                 33   0.19 
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 33   0.19 
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)                 33   0.19 
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)                 33   0.25 
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 30   1.8  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_43049| Best HMM Match : DUF947 (HMM E-Value=4)                      29   3.1  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           29   4.1  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 29/61 (47%), Positives = 40/61 (65%)
 Frame = +3

Query: 585 PSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLIL 764
           P I RT+S     +++ E KI  LF +YKD  ED+ILA+G+E  C DL + P +F VL+L
Sbjct: 60  PKIVRTLSF--PRQELDEGKILSLFAKYKDDAEDSILADGMEKFCQDLGVDPTEFVVLVL 117

Query: 765 A 767
           A
Sbjct: 118 A 118


>SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 630 ISETKINLLFNQYKDSIED-AILAEGIENLCNDLNLSPDDFKVLILA 767
           + + K++ LF++YK+  ED  ILAEGI + C DL+L P   KVLI+A
Sbjct: 59  LDKKKLSSLFDRYKEPDEDDKILAEGISHFCQDLSLDPASLKVLIIA 105


>SB_20409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISET-KINLLFNQYKDSIEDAILAE---GIENL 716
           C  +P LFN     IP T SS     K+  T K+N L   Y D +   IL++   G+EN 
Sbjct: 2   CNLSPTLFNIFTNDIPETFSSSCDPVKLDNTSKLNCLL--YADDL--VILSDSVTGLENC 57

Query: 717 CNDLNLSPDDFKVLI 761
              L +S D +K+ +
Sbjct: 58  LQKLKMSADKWKLTV 72


>SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)
          Length = 505

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 118 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 176

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 177 SIYSEE 182


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549  CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
            C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 1484 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 1542

Query: 729  NLSPDD 746
            ++  ++
Sbjct: 1543 SIYSEE 1548


>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 441 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 499

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 500 SIYSEE 505


>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
          Length = 313

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 238 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 296

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 297 SIYSEE 302


>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1317

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549  CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
            C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 1204 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 1262

Query: 729  NLSPDD 746
            ++  ++
Sbjct: 1263 SIYSEE 1268


>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 315

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 240 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 298

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 299 SIYSEE 304


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 467 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 525

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 526 SIYSEE 531


>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
          Length = 458

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C  +P LFN  L  +P T++   S+  +  TK+N L     D +  +  + G+++L N L
Sbjct: 240 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRL 298

Query: 729 NLSPDD 746
           ++  ++
Sbjct: 299 SIYSEE 304


>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
          Length = 726

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDS-IEDAILAEGIENLCND 725
           C  +P LFN  L  +P T++   S+  +  TK+N L   Y D  +  +  + G+++L N 
Sbjct: 532 CMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL--YADGLVLFSETSSGLQDLLNR 589

Query: 726 LNLSPDD 746
           L++  ++
Sbjct: 590 LSIYSEE 596


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +3

Query: 576 PKLPSIPRTMSSLGSSEKISETKINLLFNQ-YKDSIEDAIL-AEGIENLCNDLN 731
           P+  S+P + SS  SSE + E ++++  ++  K+ IE+A+   E I++  N+L+
Sbjct: 286 PQTDSVPSSSSSSESSELLHEKQLDIFVDELLKEVIENAVSDVEQIKDFANNLS 339


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 279 NYITTVYPMGHCLSCFKSQANAEIRSITGPHAKNDEVTD 395
           NY+  V+  G C +CF S+ +     +    A+N   TD
Sbjct: 6   NYVENVWRKGKCANCFGSKLDHSTTQVKNGGARNTSSTD 44


>SB_43049| Best HMM Match : DUF947 (HMM E-Value=4)
          Length = 209

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 525 LNVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIE 683
           L +QK+   +   +L          TM SL SS KISE + N    +YK  ++
Sbjct: 71  LAIQKHDESDFNKRLVQSLEEQHENTMQSLVSSSKISEAEANAYIERYKKEVD 123


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 549 CEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDL 728
           C+   +  N K     + +S + S  K  ETK  ++   YKD  E  ++AE ++ L  D 
Sbjct: 386 CQSLQEEQNFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDKYE-GLMAEKLQELREDY 444

Query: 729 NLSPDDFK 752
           +     FK
Sbjct: 445 DSDARSFK 452


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/88 (28%), Positives = 46/88 (52%)
 Frame = +3

Query: 504  EQSSCDPLNVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIE 683
            ++SS D L+V+ + +  K  KL + K  S+P     L  +   +E+ ++ L +   +  E
Sbjct: 2181 QKSSDDTLSVKSSFIAIKK-KLLDAKNSSLPVIKGFLLFT---AESMLDNLCDSLTEKTE 2236

Query: 684  DAILAEGIENLCNDLNLSPDDFKVLILA 767
            +  L E      + LN+SP D ++L+LA
Sbjct: 2237 EQDLEEE-----SALNMSPSDLELLVLA 2259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,277
Number of Sequences: 59808
Number of extensions: 371167
Number of successful extensions: 900
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)