Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g15
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12760.1 68416.m01593 expressed protein similar to RP42 prote...    50   2e-06
At1g15860.1 68414.m01903 expressed protein                             44   1e-04
At5g28400.1 68418.m03448 expressed protein                             32   0.48 
At5g28320.1 68418.m03438 expressed protein This is likely a pseu...    32   0.48 
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    31   0.64 
At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containi...    30   2.0  
At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal, puta...    29   3.4  
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    28   6.0  
At3g47720.1 68416.m05199 expressed protein                             28   7.9  

>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
           [Homo sapiens] GI:9896486; contains Pfam profile
           PF00627: UBA/TS-N domain, PF03556: Domain of unknown
           function (DUF298)
          Length = 250

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 642 KINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILA 767
           ++  L+N+YKD   D ILAEGI  LCNDL + P D   L+L+
Sbjct: 59  RLEELYNRYKDPYSDMILAEGISVLCNDLEVEPQDIVTLVLS 100


>At1g15860.1 68414.m01903 expressed protein
          Length = 225

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/57 (40%), Positives = 37/57 (64%)
 Frame = +3

Query: 597 RTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILA 767
           R+ SS  S++++   +I+ LFNQY +     I  EGIE LC++L +S  D ++L+LA
Sbjct: 23  RSASSKASNKEMD--RIDHLFNQYANKSSSLIDPEGIEELCSNLEVSHTDIRILMLA 77


>At5g28400.1 68418.m03448 expressed protein
          Length = 996

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 642  KINLLFNQYKDSIEDAILAE-GIENLCNDLNLS-PD 743
            K+  L  ++K+++E+A+LAE G+EN C D  +S PD
Sbjct: 957  KLVQLQAKFKNALEEAVLAENGVENNCRDAEISCPD 992


>At5g28320.1 68418.m03438 expressed protein This is likely a
            pseudogene.
          Length = 967

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 642  KINLLFNQYKDSIEDAILAE-GIENLCNDLNLS-PD 743
            K+  L  ++K+++E+A+LAE G+EN C D  +S PD
Sbjct: 928  KLVQLQAKFKNALEEAVLAENGVENNCRDAEISCPD 963


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 573 NPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENL 716
           NP    + + + S+G+  +I ETKI+LLF+  KD     ++A G E +
Sbjct: 17  NPTSNDLKKILESVGA--EIDETKIDLLFSLIKDHDVTELIAAGREKM 62


>At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containing
           protein low similarity to RNA binding protein PufA
           [Dictyostelium discoideum] GI:5106561; contains Pfam
           profile PF00806: Pumilio-family RNA binding repeat
          Length = 477

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 580 FGLNSLGVFSQTKFFCTFNGSHELCSPKEFNTFKLFMFVFKLFS 449
           FG N  G    T+F CT          + F  FKLF+ V ++FS
Sbjct: 62  FGTNFWGT---TRFMCTLRQGPNYIHYQSFTAFKLFIVVVQVFS 102


>At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal,
           putative strong similarity to glyoxysomal malate
           dehydrogenase (EC 1.1.1.37) SP|P19446 {Citrullus
           lanatus}, SP|P46488 {Cucumis sativus}, [Medicago sativa]
           GI:2827078, SP|Q42972 {Oryza sativa}, SP|Q9ZP05
           {Arabidopsis thaliana}, SP|P37228 {Glycine max};
           contains InterPro entry IPR001236: Lactate/malate
           dehydrogenase
          Length = 354

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 640 VSDIFSLDPSDDIVRGIDGNFGLNSLGVFSQTKFFCTF 527
           V+++ SLDP +  V  + G+ G+  L + SQ K  C+F
Sbjct: 199 VAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSF 236


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 766 ANIKTLKSSGLKLRSLHRFSMPSAKIASSIESLYWLNNRF 647
           A IK L++    + +    SMPS K   +++SLY  NNRF
Sbjct: 116 AAIKNLRTLSF-MNNKFNGSMPSVKNFGALKSLYLSNNRF 154


>At3g47720.1 68416.m05199 expressed protein
          Length = 316

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +3

Query: 543 LVCEKTPKLF---NPKLP--SIPRTMSSLGSSEKISETKINLLFNQYKD 674
           +VC KTP +    NPK P  S P  ++S+  S+ +++++I L+   YK+
Sbjct: 231 VVCIKTPSILKRKNPKSPWISFPVLINSI--SKFLNQSQIRLIHKHYKE 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,374,687
Number of Sequences: 28952
Number of extensions: 281061
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)