Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g14
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 32 0.098
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.91
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.8
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 2.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 6.4
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.4
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 6.4
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 6.4
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 6.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.4
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 25 8.5
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 8.5
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 8.5
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 8.5
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.9 bits (69), Expect = 0.098
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 243 CQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKHQK 374
C KR R+Y H +T P SI K ++R KR+H++
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQ 620
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 0.91
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 89 SMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVL 268
S+S + KK+++K K KE+V + ++ E +L SK+ + T E + + L
Sbjct: 83 SISSKKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLKKSL 142
Query: 269 CRNL--PPLNASMQRAVTEIDIEDT 337
PL+ + R +D+E T
Sbjct: 143 LEEKLGLPLSDADSRLYKVVDVETT 167
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 360 VSILYATNVSSISISVTARCILALSGGRFLHRTCATVSGNVYI 232
+ +L+AT SI +++ A+ ++ + +F +T +SG YI
Sbjct: 544 LKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYI 586
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 124 LVDFLLVLNRHT**KVLKYFIKYKIDKKL 38
++ F+L+ NRH ++ KY++ + D+K+
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKV 29
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 521 EWLVNLSAKINNINPVIDRI 580
EW + SA +N I+PV+D++
Sbjct: 852 EWSAHYSALVNRISPVLDKL 871
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 3.7
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +2
Query: 44 FINFVFYEIFQHFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKD 223
F+N + + +F++ + Y ++IN K P QV+ + I+ +V L +S
Sbjct: 780 FVNDLVFYLFRNNMFQFIEIYVQRINPSKTP-----QVVGALLDIDCDEELVQNLLMS-- 832
Query: 224 AVQMYTLPETVAQVLCRN-----LPPLNASMQRAVTEIDIEDTLVAYRIETKTSEVLVAS 388
V + E V +V RN LP L + +Q + I D L I++ + +
Sbjct: 833 VVGQVPVDELVEEVERRNRLKLLLPYLESLLQSGSQDRAIYDALAKIYIDSNNNPEVFLK 892
Query: 389 DLDF 400
+ +F
Sbjct: 893 ENNF 896
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 234 CTHCQKRSRRSYAETCH-RSTRVCNEPLLKSISKTRWSRIESKRKHQK 374
C C K+ +RS H RS +P + I R+SR ++ R+H++
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFV-CICGKRFSRRDNLRQHER 471
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 137 KEFKEQVIKTVTRIEESHNVVG 202
K F+EQV K ++IE H V+G
Sbjct: 31 KAFREQVEKHFSKIERLHQVLG 52
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 113 KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLN 292
K+ ++ EF E+ ++ ++R+E+ ++G + K +T+PE V+ + L PLN
Sbjct: 283 KMELKRVTTEFDEKSVE-ISRLEK---LLGKVMEVKSRSMEFTVPEAEIDVIEKRLQPLN 338
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +2
Query: 239 TLPETVAQVLCRNLPPLN--ASMQRAVTEIDIEDTLVAYRIETKTSEVLVASDLDFTACV 412
T+P+ V + N+ L S +++ + +E+ + T S +DFT C
Sbjct: 234 TIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTICY 293
Query: 413 VHRIKRK 433
H R+
Sbjct: 294 THNHHRR 300
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 322 RYRRHVGRV*NRNENIRSFSGIR 390
R HVGR NR+ N+ S SG R
Sbjct: 82 RRNNHVGRWANRHSNVSSSSGSR 104
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 321 SISKTRWSRIESKRKHQK-F*WHQILISRRASSTGSRGN 434
SI KT W E R+H K + +S+ SS SR N
Sbjct: 205 SIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNASRAN 243
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 356 RFYTRPTCLRYRFQ 315
RF+T P C+RY F+
Sbjct: 23 RFFTLPKCIRYHFR 36
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 178 NPSYCLDYLLLEFLWHFALVDFLLVLN 98
N +Y YL +F+W + VD+LL+ N
Sbjct: 916 NETYSSMYLAGKFVWDTSDVDYLLMYN 942
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = +2
Query: 74 QHFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPET 253
+H + + K+ +N + F E + + T SH+ L + + LPET
Sbjct: 274 EHLCMYQLPELKQTVNSDHIVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTSKNLLPET 333
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 491 VRAMLHEDGDEWLVNLSAKINNINPVIDRIMEDESVEGVIMTNKDGCPIMTNVNAAGATN 670
+R + E E LV L+ I++ V++ + + + E +++ + G P + A TN
Sbjct: 600 LRTAVEEREKEQLVTLTY-IDDEGDVVELVSDSDLREAILLARRRGLPRLEVRGVAAFTN 658
Query: 671 YALALH 688
+ + H
Sbjct: 659 HLESSH 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,315
Number of Sequences: 5004
Number of extensions: 57177
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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