Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g14
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0394 - 24638466-24638723,24638849-24638914,24639437-246394...    29   2.9  
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536...    28   6.7  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    28   8.8  

>05_05_0394 -
           24638466-24638723,24638849-24638914,24639437-24639463,
           24640054-24640122
          Length = 139

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 396 SRSDATKTSDVFVSILYATNVSSISISVTARCILA 292
           S +DA  TSDV  +   A    S+S SV A C LA
Sbjct: 91  SAADAVPTSDVARTAAAAATARSLSFSVAAICFLA 125


>01_06_0957 -
           33352904-33353212,33353316-33353465,33353544-33353684,
           33354116-33354709
          Length = 397

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 323 DIEDTLVAYRIETKTSEVLVASDLDFTACVVHRIKRKHKKN 445
           DIE   V Y + T  +++ +A  + FTAC+VH+ ++ H +N
Sbjct: 202 DIEPCGVTYWLIT-IAQIPIA--VAFTACIVHQKRKSHAQN 239


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 202 SSVSVKRRSPNVHIARNGRAGPMQKPA 282
           +S  ++RR P+VHIA  G +    +PA
Sbjct: 24  ASTGLRRRPPDVHIAGTGASAERSEPA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,909
Number of Sequences: 37544
Number of extensions: 339778
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)