Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g14
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 284 VAGFCIGPARPFLAMCTFGLRLLTDTELQQR 192
           V  F +   +PF+   T  L  LTD E  +R
Sbjct: 442 VTYFIVRALKPFIPAVTKSLASLTDAENSRR 472


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 398 FTACVVHRIKRKHKKNLI 451
           +TACVV      H +N+I
Sbjct: 471 YTACVVEAFDYLHSRNII 488


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/46 (21%), Positives = 19/46 (41%)
 Frame = +3

Query: 231 KCTHCQKRSRRSYAETCHRSTRVCNEPLLKSISKTRWSRIESKRKH 368
           +C  C KR  R +    H       +P   S    ++ ++ + R+H
Sbjct: 11  ECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,423
Number of Sequences: 438
Number of extensions: 4368
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)